Locus 4906

Sequence ID 2R_DroMel_CAF1
Location 16,029,601 – 16,029,697
Length 96
Max. P 0.649374
window7859

overview

Window 9

Location 16,029,601 – 16,029,697
Length 96
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.79
Mean single sequence MFE -21.50
Consensus MFE -11.40
Energy contribution -11.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.85
Structure conservation index 0.53
SVM decision value 0.24
SVM RNA-class probability 0.649374
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16029601 96 - 20766785
UCAAAAGCAAUUUGAAACAAAUUUUAUUGCCAAAGUUUU-UG----------------------GAGCACAUGGAAAAUUGUUCAAGUGCCACCGCAAACAGAAAAGGCAAA-ACCGAAA
(((((.....)))))...........(((((...((((.-((----------------------(.((((.((((......)))).))))..))).))))......))))).-....... ( -19.00)
>DroPse_CAF1 104284 115 - 1
UGGAAAGCAAUUUGAAACAAAUUUUAUUGCUAAAGUUUU-UUGGGGGGAGGGAGUGCCUGUGGAGAGCACAUGGAAAAUUGUUCAAGUGCCGCCACAAACAGA---GGAAAA-ACCAUAG
(((..((((((..((......))..))))))....((((-((((((.(......).)))((((.(.((((.((((......)))).))))).))))...))))---)))...-.)))... ( -29.00)
>DroEre_CAF1 91132 94 - 1
UCGAAAGCAAUUUGAAACAAAUUUUAUUGCCAAAGUUUU-UG----------------------GAGCACAUGGAAAAUUGUUCAAGUGCCACCGCAAACAGAAAAAGCAAAAACCG---
......(((((..((......))..)))))....((((.-((----------------------(.((((.((((......)))).))))..))).)))).................--- ( -16.80)
>DroWil_CAF1 295438 90 - 1
UGAAAAGCAAUUUGAAACAAAUUUUAUUGCCAAAGUUUUUUG----------------------GAGCACAUGGAAAAUUGUUCAAGUGCCACAAAAAC-------GAAAAA-ACGAGAA
......(((((..((......))..)))))....((((((.(----------------------..((((.((((......)))).))))..)))))))-------......-....... ( -16.70)
>DroYak_CAF1 94390 96 - 1
UCGAAAGCAAUUUGAAACAAAUUUUAUUGCCAAAGUUUU-UG----------------------GAGCACAUGGAAAAUUGUUCAAGUGCCACCGCAAACAGAAAAGGAAAA-UCCACAA
......(((((..((......))..)))))....((((.-((----------------------(.((((.((((......)))).))))..))).))))......((....-.)).... ( -18.50)
>DroPer_CAF1 97952 115 - 1
UGGAAAGCAAUUUGAAACAAAUUUUAUUGCUAAAGUUUU-UUGGGGGGAGGGAGUGCCUGUGGAGAGCACAUGGAAAAUUGUUCAAGUGCCGCCACAAACAGA---GGAAAA-ACCAUAG
(((..((((((..((......))..))))))....((((-((((((.(......).)))((((.(.((((.((((......)))).))))).))))...))))---)))...-.)))... ( -29.00)
>consensus
UCGAAAGCAAUUUGAAACAAAUUUUAUUGCCAAAGUUUU_UG______________________GAGCACAUGGAAAAUUGUUCAAGUGCCACCACAAACAGA___GGAAAA_ACCAUAA
......(((((..((......))..)))))..................................(.((((.((((......)))).)))))............................. (-11.40 = -11.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:51 2006