Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,027,457 – 16,027,550 |
Length | 93 |
Max. P | 0.800313 |
Location | 16,027,457 – 16,027,550 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 85.70 |
Mean single sequence MFE | -23.14 |
Consensus MFE | -16.02 |
Energy contribution | -17.66 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.05 |
Mean z-score | -2.17 |
Structure conservation index | 0.69 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.800313 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16027457 93 + 20766785 GGCAAGGAAAAGGAUGAUCUCCUUCACAACGGCAGGUCAAACCAACAAUCUUGUCUCUGUUCCAGAGACUUUGGCCUCCGCCAAGAAAACUUU (((...(..(((((.....)))))..)...((.((((((((...........(((((((...))))))))))))))))))))........... ( -28.50) >DroSec_CAF1 82573 93 + 1 GGCAAGGAAAGGGAUGAUCUCCUUCACACCCUUAGGUCAAACCAACCAUCUUGUCUCUGUUCCAGAGACAUUGGCCUCAGCCCAGAAAACUUU (((.(((.(((((.(((......)))..))))).((.....))..(((...((((((((...)))))))).))))))..)))........... ( -28.50) >DroSim_CAF1 85815 85 + 1 GGCAAGGAAUAGGAUGAUCUCCUUCAAAC-CUUAGGUCAAC--CACCAUCUUGUC-CUGUACAAAAGACAUGGG-CUCCGCCCAAA--A-CUU (((((((....((.((((((.........-...)))))).)--)....)))))))-..............((((-(...)))))..--.-... ( -20.40) >DroEre_CAF1 88998 93 + 1 GGCAAGCAAAAGGAUGAUCUCCUUCACACCCUUAGGUCAAACCAAGCAUCUUGUCUCGGUUCCAGAGACAUUGGCCUCCGCCCAGAAAACUUU (((......((((.(((......)))...))))(((((((...........((((((.......)))))))))))))..)))........... ( -22.20) >DroYak_CAF1 92234 93 + 1 GGCAAUCAAAAGGAUGAUCUCCUUCACACCCUUAGGUCAAACCAACCAUCUUGUCCCUGUUCCAGAAACAUUGGCCUCCGCCCAGAAAACUUU (((......((((.(((......)))...))))(((((((...........(((..(((...)))..))))))))))..)))........... ( -16.10) >consensus GGCAAGGAAAAGGAUGAUCUCCUUCACACCCUUAGGUCAAACCAACCAUCUUGUCUCUGUUCCAGAGACAUUGGCCUCCGCCCAGAAAACUUU (((......(((((.....))))).........(((((((...........(((((((.....))))))))))))))..)))........... (-16.02 = -17.66 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:50 2006