Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,022,725 – 16,022,823 |
Length | 98 |
Max. P | 0.978126 |
Location | 16,022,725 – 16,022,823 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 75.76 |
Mean single sequence MFE | -23.94 |
Consensus MFE | -17.38 |
Energy contribution | -18.74 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.05 |
Mean z-score | -1.97 |
Structure conservation index | 0.73 |
SVM decision value | 1.81 |
SVM RNA-class probability | 0.978126 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16022725 98 + 20766785 UCAUUACUUUUACUUCCGAAUCGACUCCAAAUAUUUCUCUCAGUGUCGUUUUGCCGGCGUGUGUGUGCACACGCUGCAUAAAUGAUUUAUGGCCAACU .......................................(((..((((((((((.((((((((....))))))))))).)))))))...)))...... ( -23.50) >DroSec_CAF1 77875 81 + 1 GUAUCACUU-----------------CAAAAUGUUUCUCUCAGUGUCGUUUUGCCAGCGUGUGUGUGCACACGCUGCAUAAAUGAUUUAUGGCCAACU .........-----------------.............(((..((((((((((.((((((((....))))))))))).)))))))...)))...... ( -24.20) >DroSim_CAF1 81087 81 + 1 GUAUUACUU-----------------CUAAAUGUUUCUCUCAGUGUCGUUUUGCCAGCGUGUGUGUGCACACGCUGCAUAAAUGAUUUAUGGCCAACU .........-----------------.............(((..((((((((((.((((((((....))))))))))).)))))))...)))...... ( -24.20) >DroEre_CAF1 84202 93 + 1 ----CACCU-UUUCUUCGAGUCAGCCCCAUAUAUUUUUCUCAGUGUCGGUUUGCCGUGCAGUGUGUGCACACGCUGCAUAAAUGAUUUAUGGGCAACU ----.....-.............((((.(((.(((............((....))((((((((((....))))))))))....))).))))))).... ( -26.70) >DroYak_CAF1 87329 94 + 1 ----UACAUCUUUCUUCGAGUCAGCCCUAUAUAUUUCUUUCAGUGUCGGUUUGAGGGCGAGUGUGUGCACACGCUGCAUAAAUGAUUUAUGGGCAACU ----........(((..(((((((((((........(.......)........))))).((((((....)))))).......))))))..)))..... ( -21.09) >consensus __AUUACUU_U___U_CGA_UC__C_CCAAAUAUUUCUCUCAGUGUCGUUUUGCCGGCGUGUGUGUGCACACGCUGCAUAAAUGAUUUAUGGCCAACU .......................................(((..((((((((((.((((((((....))))))))))).)))))))...)))...... (-17.38 = -18.74 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:49 2006