| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,021,017 – 16,021,113 |
| Length | 96 |
| Max. P | 0.555898 |
| Location | 16,021,017 – 16,021,113 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 85.99 |
| Mean single sequence MFE | -21.95 |
| Consensus MFE | -18.57 |
| Energy contribution | -18.43 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.555898 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16021017 96 - 20766785 CC--------CGA--UCCCCGAAGCCUCAGCUCCACG-AAAUAACAAUGGCAGCGGCAUCAACAGCAGCUGCAACAAUGCAACAUGACAACUUCCGUUGCAUUCGCC ..--------...--.....(.(((....))).).((-((.........(((((.((.......)).))))).....((((((............)))))))))).. ( -21.60) >DroSec_CAF1 76123 96 - 1 CC--------CGA--UCCCCGAAGCCCCAUCUCCACG-AAAUAACAAUGGCAGCGGCAUCAACAGCAGCUGCAACAAUGCAACAUGACAACUUCCGUUGCAUUCGCC ..--------...--....................((-((.........(((((.((.......)).))))).....((((((............)))))))))).. ( -19.80) >DroSim_CAF1 77807 96 - 1 CC--------CGA--UCCCCGAAGCCCCAUCUCCGCG-AAAUAACAAUGGCAGCGGCAUCAACAGCAGCUGCAACAAUGCAACAUGACAACUUCCGUUGCAUUCGCC ..--------...--...................(((-((.........(((((.((.......)).))))).....((((((............))))))))))). ( -23.40) >DroEre_CAF1 82414 104 - 1 CCCCGAUUCCCGA--UCCCCGGAGCUCCGUGCUCACG-AAAUAACAAUGGCAGCGGCAUCAACAGCAGCUGCAACAAUGCAACAUGACAACUUCCGUUGCAUUCGCC .............--....((((((.....)))).))-...........(((((.((.......)).)))))...((((((((............)))))))).... ( -26.30) >DroYak_CAF1 85502 106 - 1 CCCCGAUCCCCGAAGCCCCCGAAGCCUCAUACUCACG-AAAUAACAAUGGCAGCGGCAUCAACAGCAGCUGCAACAAUGCAACAUGACAACUUCCGUUGCAUUCGCC ...........((.((.......)).)).......((-((.........(((((.((.......)).))))).....((((((............)))))))))).. ( -21.60) >DroAna_CAF1 85266 87 - 1 UC--------CUA------------CCCUGCCCCACGCAAAUAACAAUGGCAGUGGCAUCAACAGCAGCUGCAACAAUGCAACAUGACAACUUCCGUUGCAUUCGCC ..--------...------------...........((...........(((((.((.......)).)))))...((((((((............)))))))).)). ( -19.00) >consensus CC________CGA__UCCCCGAAGCCCCAUCCCCACG_AAAUAACAAUGGCAGCGGCAUCAACAGCAGCUGCAACAAUGCAACAUGACAACUUCCGUUGCAUUCGCC .................................................(((((.((.......)).)))))...((((((((............)))))))).... (-18.57 = -18.43 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:48 2006