| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,004,339 – 16,004,432 |
| Length | 93 |
| Max. P | 0.614636 |
| Location | 16,004,339 – 16,004,432 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 82.60 |
| Mean single sequence MFE | -14.52 |
| Consensus MFE | -10.72 |
| Energy contribution | -11.22 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.614636 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16004339 93 + 20766785 AAGCCAACGUG--AAUAUAAAAAGCGAACCGCUUAAUUAAAUUGU-UUGCGGGUAUUAAAAUGGCAAAA-AAAUGAAAUGGGAAUGGCGAAAGGGGA ..((((.((..--((((....(((((...)))))........)))-)..))(.(((....))).)....-..............))))......... ( -15.30) >DroSec_CAF1 59774 85 + 1 AAGCCAACGUG--AAUAUAAAAAGCGAACCGCUUAAUUAAAUUGU-UUGCGGGUAUUAAAAUGGCAAA--AAAUGAAAUGGGAAAG-------GAGA ..((((.(((.--..........)))..((((..(((......))-).)))).........))))...--................-------.... ( -14.00) >DroSim_CAF1 60601 92 + 1 AAGCCAACGUG--AAUAUAAAAAGCGAACCGCUUAAUUAAAUUGU-UUGCGGGUAUUAAAAUGGCAAA--AAAUGAAAUGGGAAAGGCGAAAGGGGA ..((((.(((.--..........)))..((((..(((......))-).)))).........))))...--.................(....).... ( -15.10) >DroEre_CAF1 65917 79 + 1 AAGCCAACGUG--AAUAUAAAAAGCGAACCGCUUAAUUAAAUUGU-UUGCGGGUAUUAAAAUGGCAAAAA-AAUAAAGGGGGA-------------- ..((((.(((.--..........)))..((((..(((......))-).)))).........)))).....-............-------------- ( -14.00) >DroYak_CAF1 68692 94 + 1 AAGCCAACGUG--AAUAUAAAAAGCGAACCGCUUAAUUAAAUUGU-UUGCGGGUAUUAAAAUGGCAAAAAAAAUGAAAGGGGAAGGGAAAAGUGGCG ..((((.(((.--..........)))..((.(((..(((.....(-((((.(.........).))))).....)))))).))..........)))). ( -15.40) >DroAna_CAF1 68373 87 + 1 AAGCCAUCAAGCUUAUAUAAAAAGCGCACCGCUUAAUUAAAUUGUUUUGCGGGAAUUAAAAUGCCAAAA-AAAUGAUAUA---------AAAGGGGA .....((((.((((.......))))...((((..(((......)))..)))).................-...))))...---------........ ( -13.30) >consensus AAGCCAACGUG__AAUAUAAAAAGCGAACCGCUUAAUUAAAUUGU_UUGCGGGUAUUAAAAUGGCAAAA_AAAUGAAAUGGGAA_G___AAAGGGGA ..((((.(((.............)))..((((...((......))...)))).........))))................................ (-10.72 = -11.22 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:41 2006