Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,002,559 – 16,002,658 |
Length | 99 |
Max. P | 0.642994 |
Location | 16,002,559 – 16,002,658 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 77.07 |
Mean single sequence MFE | -21.73 |
Consensus MFE | -12.69 |
Energy contribution | -13.50 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.14 |
Mean z-score | -1.57 |
Structure conservation index | 0.58 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.642994 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16002559 99 - 20766785 AAUUCCAUUCCAUUCCGUUCCAUGCCCCCGU--------UUUUCACCGCCUUGGCUUUUGUUUGCUUUAAUUAAAAGUUAAGUAGGUGCGAG-----CAACAAUGCCGGAAC ................(((((..........--------....((((..(((((((((((...........)))))))))))..)))).(.(-----((....))))))))) ( -23.40) >DroSim_CAF1 58842 84 - 1 AAUUCC---------------AUACCCCCGU--------UUUUCACCGCCUUGGCUUUUGUUUGCUUUAAUUAAAAGUUAAGUAGGUGCGAG-----CAACAAUGCCGGAAC ..((((---------------..........--------....((((..(((((((((((...........)))))))))))..)))).(.(-----((....)))))))). ( -21.20) >DroEre_CAF1 64134 99 - 1 AAUUCCAUUCCAUUUCAUACCAUACCCCCGU--------UUUUCACCGUCUUGGCUUUUGUUUGCUUUAAUUAAAAGUUAAGUAGGUGCGAG-----CAACAAUGCCGGAAC .......((((....................--------....((((..(((((((((((...........)))))))))))..)))).(.(-----((....)))))))). ( -20.50) >DroWil_CAF1 242191 86 - 1 ACU------------CACCCCACACCUCUCA--------UU-----UGCCUUGCCUUUUGUUUGCUUUAAUUAAAAGUUAAGUAGGUGCGAGCGCCUCAACAAUGCCAAAA- ...------------..........(((.((--------((-----(((.(((.((((((...........)))))).)))))))))).)))...................- ( -12.70) >DroYak_CAF1 66882 99 - 1 AAUUCCGUUCCAUUCCUUUACAUACCCCCGU--------UUUUCACCGCCUUGGCUUUUGUUUGCUUUAAUUAAAAGUUAAGUAGGUGCGAG-----CAACAAUGCCGGAAC ......(((((....................--------....((((..(((((((((((...........)))))))))))..)))).(.(-----((....))))))))) ( -23.40) >DroAna_CAF1 66671 95 - 1 -GGACCG-----------CCCCUGCCCCCGCUUUGCUUUUUUGCACCGCCUUGGCUUUUGUUUGCUUUAAUUAAAAGUUAAGUAGGUGCGAG-----CAACAAUGCCGGAAC -((....-----------..))....((.((.(((.((.((((((((..(((((((((((...........)))))))))))..))))))))-----.))))).)).))... ( -29.20) >consensus AAUUCC_________C_UCCCAUACCCCCGU________UUUUCACCGCCUUGGCUUUUGUUUGCUUUAAUUAAAAGUUAAGUAGGUGCGAG_____CAACAAUGCCGGAAC ..........................((.((........(((.((((..(((((((((((...........)))))))))))..)))).)))............)).))... (-12.69 = -13.50 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:38 2006