Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,991,944 – 15,992,039 |
Length | 95 |
Max. P | 0.593491 |
Location | 15,991,944 – 15,992,039 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 88.62 |
Mean single sequence MFE | -40.09 |
Consensus MFE | -28.55 |
Energy contribution | -28.95 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.82 |
Structure conservation index | 0.71 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593491 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15991944 95 - 20766785 A--CAAUGCAAUGGCCAAAGCCUGUUGGCCUGGUCCACUAGCGGCUAUAUCGUGGA--G---AAGGGCCAGGACGAACGCACUGCUGCG--------CUGCUGCGUUGGG .--(((((((..(((((.((..((((.(((((((((.((.((((.....))))..)--)---..)))))))).).))))..))..)).)--------))..))))))).. ( -39.50) >DroSec_CAF1 47651 95 - 1 A--CAAUGCAAUGGCCAAAGCCUGUUGGCCUGGUCCACUAGCAGCGAAAUCGAGGA--G---AAGGGCCAGGACGAACGCACUGCUGCG--------CUGCUGCGUUGGG .--(((((((..(((((.((..((((.(((((((((.....(..((....))..).--.---..)))))))).).))))..))..)).)--------))..))))))).. ( -38.50) >DroSim_CAF1 48393 95 - 1 A--CAAUGCAAUGGCCAAAGCCUGUUGGCCUGGUCCACUAGCAGCGAAAUCGAGGA--G---AAGGGCCAGGACGAACGCACUGCUGCG--------CUGCUGCGUUGGG .--(((((((..(((((.((..((((.(((((((((.....(..((....))..).--.---..)))))))).).))))..))..)).)--------))..))))))).. ( -38.50) >DroEre_CAF1 53928 105 - 1 A--CAAUGCAAUGGCCAAGGCCUGUUGGCCUGCUCCACUAGCAGCAAAUUCGAGGA--GCAG-AGGGCCAGGACGAACGCACUGCUGCGCUGCUGCGCUGCUGCGUUGGG .--........(((((.(((((....)))))(((((.................)))--))..-..)))))...(.((((((..((.((((....)))).)))))))).). ( -45.23) >DroYak_CAF1 56281 102 - 1 ACACAAUGCAAUGGCCAAAGCCUGUUGGCCUGCUCCACUACCAGAGAUCUCGAGGAGAGCAGAAGGGCCAGGACGAACGCACUGCUGCG--------CUGCUGCGUUGGG ...(((((((.(((((...(((....)))((((((..((....((....)).))..))))))...))))).......((((....))))--------....))))))).. ( -38.70) >consensus A__CAAUGCAAUGGCCAAAGCCUGUUGGCCUGGUCCACUAGCAGCGAAAUCGAGGA__G___AAGGGCCAGGACGAACGCACUGCUGCG________CUGCUGCGUUGGG ...(((((((..(((....))).(((.(((((((((............................)))))))).).)))(((....))).............))))))).. (-28.55 = -28.95 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:37 2006