Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,990,268 – 15,990,378 |
Length | 110 |
Max. P | 0.727579 |
Location | 15,990,268 – 15,990,378 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.02 |
Mean single sequence MFE | -43.45 |
Consensus MFE | -24.50 |
Energy contribution | -26.89 |
Covariance contribution | 2.39 |
Combinations/Pair | 1.18 |
Mean z-score | -2.60 |
Structure conservation index | 0.56 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.727579 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15990268 110 + 20766785 GCCUGCCGCGAUGUUAACUAUCAGUAACAUGGCGAGGGGUAAGUGGG----------GGCGGUGGAACCGCAGAGUCCGCGAUGCCAGCAAUAUGCGUGGGAAACCACAUAUACAUAUUA .(((..(((.((((((........)))))).))))))((((.(((((----------.((((.....))))....)))))..)))).((.....))((((....))))............ ( -41.50) >DroSec_CAF1 45944 111 + 1 GCCUGCCGCGAUGUUAACUAUCAGUAACAUGGCGAGGGGUAGGUGGG---------CGGCGGUGGAACCGCAGAGUCCACGAUGCCUGCAAUAUGCGUGGGAAACCGCGUAUACAUAUUA ...((((((.((((((........)))))).)))..(((((.(((((---------(.((((.....))))...))))))..)))))))).(((((((((....)))))))))....... ( -52.60) >DroSim_CAF1 46673 111 + 1 GCCUGCCGCGAUGUUAACUAUCAGUAACAUGGCGAGGGGUAGGUGGG---------GGGCGGUGGAACCGCAGAGUCCGCGAUGCCUGCAAUAUGCGUGGGAAACCGCGUAUACAUAUUA .(((..(((.((((((........)))))).))).)))((((((.(.---------((((.(((....)))...)))).)...))))))..(((((((((....)))))))))....... ( -49.60) >DroEre_CAF1 52219 110 + 1 GCCUGCCGCGAUGUUAACUAUCAGCAGCACGGCGAGGGGUAGGUGGG----------GGCGGUGCAACCGCAGAGUCCGCGACGCCUGCAAUAUGCGUGGUGAACCACAUAUACAUAUUA .(((((((.(.((((.......)))).).)))).))).(((((((.(----------(((..(((....)))..))))....)))))))((((((.((((....)))).....)))))). ( -42.30) >DroYak_CAF1 54569 120 + 1 GCCUGCCGCGAUGUUAACUAUCAGUAACACGGCGAGGGGUAAGUGGGGGGGACGGGGGGCGUUGGAACCGCAGAGUCCGCGAUGCCUGCAAUAUGCGUGGGAAACCACGUAUACAUAUUA .(((((((...(((((........))))))))).)))((((.((((((....)(.((..(....)..)).)....)))))..)))).....(((((((((....)))))))))....... ( -45.00) >DroAna_CAF1 46732 97 + 1 GCGGCCCGAGUUGUUAACUAUCAGGAACAACGCCUGGCG---------------------GGGGAAACCGCAGGAUCUGCCAUGCCUGCAAUAUGCACGGCA-ACCACACUUAUAUAU-A ..(((..((((((((..........)))))).((((.((---------------------(......))))))).)).))).(((((((.....))).))))-...............-. ( -29.70) >consensus GCCUGCCGCGAUGUUAACUAUCAGUAACAUGGCGAGGGGUAGGUGGG__________GGCGGUGGAACCGCAGAGUCCGCGAUGCCUGCAAUAUGCGUGGGAAACCACAUAUACAUAUUA ((((..(((.((((((........)))))).)))..))))..(((((...........((((.....))))....))))).......((.....))((((....))))............ (-24.50 = -26.89 + 2.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:36 2006