Locus 4890

Sequence ID 2R_DroMel_CAF1
Location 15,984,630 – 15,984,720
Length 90
Max. P 0.919947
window7841

overview

Window 1

Location 15,984,630 – 15,984,720
Length 90
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 81.46
Mean single sequence MFE -33.48
Consensus MFE -22.76
Energy contribution -25.48
Covariance contribution 2.73
Combinations/Pair 1.17
Mean z-score -2.85
Structure conservation index 0.68
SVM decision value 1.13
SVM RNA-class probability 0.919947
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15984630 90 + 20766785
CAACAAGCCCAACGAGCCGUGGCAUCGAACAGAACGCAUGGCCAUGGUUACGUUUGGAUCCAU----------GGAUCCAUGGCGAUGUGAACAUCCUGC
......(((.(((((((((((((..((.......))....))))))))).))))((((((...----------.)))))).)))((((....)))).... ( -35.90)
>DroSec_CAF1 40347 90 + 1
CAACAAGCCCAACGAGCCGUGGCAUCGAACAGAACGCAUAGCCAUGGUUACGUUUGGAUCCAU----------GGAUCCAUGGCGAUGUGAACAUCCUGC
......(((.(((((((((((((((((.......)).)).))))))))).))))((((((...----------.)))))).)))((((....)))).... ( -35.80)
>DroSim_CAF1 41039 90 + 1
CAACAAGCCCAACGAGCCGUGGCAUCGAACAGAACGCAUGGCCAUGGUUACGUUUGGAUCCAU----------GGAUCCAUGGCGAUGUGAACAUCCUGC
......(((.(((((((((((((..((.......))....))))))))).))))((((((...----------.)))))).)))((((....)))).... ( -35.90)
>DroEre_CAF1 46724 90 + 1
CAACAAGCCCAACGAGCCGUGGCAUCGAACAGAACGCAUGGCCAUGGUUACGUUUGGAUCCAG----------GGAUCCAUGGCGAUGUGAACAUCCUGC
......(((.(((((((((((((..((.......))....))))))))).))))((((((...----------.)))))).)))((((....)))).... ( -35.90)
>DroYak_CAF1 48741 100 + 1
CAACAAGCCCAACGAGCCGUGGCAUCGAACAGAACGCAUGGCCAUGGUUACGUUUGCAUCCAAUGGAUCCAUCGGCUCCAUGGCGAUGUGAGCAUCCUGC
......((....(((((....)).))).......(((((.(((((((...((..((.((((...)))).)).))...))))))).))))).))....... ( -34.40)
>DroAna_CAF1 41352 89 + 1
CAACACGCCCAACGAGGCGUGGCAAUGUACUGAAUCCAUGUCCAUGUCCACAUCCGUGUCCUC---AUCCAA-GUGCUCCUGC-------CACCUCCUGC
......(((......)))((((((..(((((........(..((((........))))..)..---.....)-))))...)))-------)))....... ( -22.96)
>consensus
CAACAAGCCCAACGAGCCGUGGCAUCGAACAGAACGCAUGGCCAUGGUUACGUUUGGAUCCAU__________GGAUCCAUGGCGAUGUGAACAUCCUGC
......(((.(((((((((((((..((.......))....))))))))).))))(((((((............))))))).)))((((....)))).... (-22.76 = -25.48 +   2.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:34 2006