Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,702,605 – 2,702,795 |
Length | 190 |
Max. P | 0.996419 |
Location | 2,702,605 – 2,702,705 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 90.70 |
Mean single sequence MFE | -24.12 |
Consensus MFE | -18.86 |
Energy contribution | -19.26 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -3.40 |
Structure conservation index | 0.78 |
SVM decision value | 2.69 |
SVM RNA-class probability | 0.996419 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2702605 100 + 20766785 UCGAUGGCGUCACUUACACAUGUCGAACAACCGCCAUCAAUAAAUACUAACGGUGCCUCGCGGCAUCAACUCCACAUCCACAUCCAAAGUGCAACACUCC ..(((((((((((........)).)).....))))))).............((((((....))))))...........(((.......)))......... ( -21.60) >DroSec_CAF1 17493 100 + 1 UCGAUGGCGUCACUUACACAUGUCGAACAACCGCCAUCAAUAAAUACUAACGGUGCCUUGCGGCAUCAACUCCGCAUCCACAUCCAAAGUGCAAAACUCC ..(((((((((((........)).)).....))))))).............((((((....))))))......((((...........))))........ ( -23.50) >DroSim_CAF1 14898 100 + 1 UCGAUGGCGUCACUUACACAUGUCGAACAACCGCCAUCAAUAAAUACUAACGGUGCCUUGCGGCAUCAACUCCACAUCCACAUCCAAAGCGCAACACUCC ..(((((((((((........)).)).....))))))).............((((((....))))))................................. ( -21.00) >DroEre_CAF1 14936 89 + 1 UCGCUGGCGUCACUUACACAUGUCGAACAACCGCCAUCAAUAAAUACUAACGGUGCCUCGCGGCAUC-----------CACAUCCAAAGUGCGCCACUCC ....(((((.(((((....(((.((......)).)))..............((((((....))))))-----------........)))))))))).... ( -23.90) >DroYak_CAF1 14614 100 + 1 UCGAUGGCGUCACUUACACAUGUCGAACAACCGCCAUCAAUAAAUACUAACGGCGCCUCGCGGCAUCAACUCCACAUCGACAUCCAAAGUGCGCCACUAU ....(((((.(((((....(((((((......(((................)))(((....)))............)))))))...)))))))))).... ( -30.59) >consensus UCGAUGGCGUCACUUACACAUGUCGAACAACCGCCAUCAAUAAAUACUAACGGUGCCUCGCGGCAUCAACUCCACAUCCACAUCCAAAGUGCAACACUCC ..(((((((((((........)).)).....))))))).............((((((....))))))................................. (-18.86 = -19.26 + 0.40)
Location | 2,702,605 – 2,702,705 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 90.70 |
Mean single sequence MFE | -33.34 |
Consensus MFE | -25.12 |
Energy contribution | -25.40 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.07 |
Mean z-score | -2.04 |
Structure conservation index | 0.75 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.826416 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2702605 100 - 20766785 GGAGUGUUGCACUUUGGAUGUGGAUGUGGAGUUGAUGCCGCGAGGCACCGUUAGUAUUUAUUGAUGGCGGUUGUUCGACAUGUGUAAGUGACGCCAUCGA ((((((...)))))).((((...((((.(((....((((....))))((((((((....))))))))......))).))))((((.....)))))))).. ( -28.30) >DroSec_CAF1 17493 100 - 1 GGAGUUUUGCACUUUGGAUGUGGAUGCGGAGUUGAUGCCGCAAGGCACCGUUAGUAUUUAUUGAUGGCGGUUGUUCGACAUGUGUAAGUGACGCCAUCGA ((.(((((((((((((.((....)).))))(((((((((....))))((((((((....)))))))).......)))))..))))))..))).))..... ( -30.70) >DroSim_CAF1 14898 100 - 1 GGAGUGUUGCGCUUUGGAUGUGGAUGUGGAGUUGAUGCCGCAAGGCACCGUUAGUAUUUAUUGAUGGCGGUUGUUCGACAUGUGUAAGUGACGCCAUCGA .(.((((..(....((.((((.((...........((((....))))((((((((....)))))))).......)).)))).))...)..)))))..... ( -29.10) >DroEre_CAF1 14936 89 - 1 GGAGUGGCGCACUUUGGAUGUG-----------GAUGCCGCGAGGCACCGUUAGUAUUUAUUGAUGGCGGUUGUUCGACAUGUGUAAGUGACGCCAGCGA ....((((((((((((.((((.-----------((((((....))))((((((((....)))))))).......)).)))).)).))))).))))).... ( -35.10) >DroYak_CAF1 14614 100 - 1 AUAGUGGCGCACUUUGGAUGUCGAUGUGGAGUUGAUGCCGCGAGGCGCCGUUAGUAUUUAUUGAUGGCGGUUGUUCGACAUGUGUAAGUGACGCCAUCGA ...(((((((((((((.((((((((((((........)))))((.((((((((((....)))))))))).))..))))))).)).))))).))))))... ( -43.50) >consensus GGAGUGUUGCACUUUGGAUGUGGAUGUGGAGUUGAUGCCGCGAGGCACCGUUAGUAUUUAUUGAUGGCGGUUGUUCGACAUGUGUAAGUGACGCCAUCGA ...(((...(((((((.((((.((...........((((....))))((((((((....)))))))).......)).)))).)).))))).)))...... (-25.12 = -25.40 + 0.28)
Location | 2,702,626 – 2,702,730 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 90.47 |
Mean single sequence MFE | -37.10 |
Consensus MFE | -30.82 |
Energy contribution | -32.90 |
Covariance contribution | 2.08 |
Combinations/Pair | 1.06 |
Mean z-score | -2.25 |
Structure conservation index | 0.83 |
SVM decision value | 2.14 |
SVM RNA-class probability | 0.988977 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2702626 104 - 20766785 --AGAUCCAAGAUGCCAUAUGCCAGAUGGAGUGUUGCACUUUGGAUGUGGAUGUGGAGUUGAUGCCGCGAGGCACCGUUAGUAUUUAUUGAUGGCGGUUGUUCGAC --...((((.....((((((.(((....(((((...))))))))))))))...))))(((((((((....))))((((((((....)))))))).......))))) ( -34.50) >DroSec_CAF1 17514 106 - 1 CCAGAUCCAAGUUGCCAUAUGCCAGAUGGAGUUUUGCACUUUGGAUGUGGAUGCGGAGUUGAUGCCGCAAGGCACCGUUAGUAUUUAUUGAUGGCGGUUGUUCGAC (((.(((((((.(((......((....))......))).))))))).))).......(((((((((....))))((((((((....)))))))).......))))) ( -37.10) >DroSim_CAF1 14919 106 - 1 CCAGAUCCAAGAUGCCAUAUGCCAGAUGGAGUGUUGCGCUUUGGAUGUGGAUGUGGAGUUGAUGCCGCAAGGCACCGUUAGUAUUUAUUGAUGGCGGUUGUUCGAC (((.(((((((.(((.((((.((....)).)))).))).))))))).))).......(((((((((....))))((((((((....)))))))).......))))) ( -39.60) >DroEre_CAF1 14957 95 - 1 CCAGAUCCAAGAUGCCAUAUGCCAGAUGGAGUGGCGCACUUUGGAUGUG-----------GAUGCCGCGAGGCACCGUUAGUAUUUAUUGAUGGCGGUUGUUCGAC (((.(((((((.((((((...((....)).))))))...))))))).))-----------).((((....))))((((((((....))))))))(((....))).. ( -37.10) >DroYak_CAF1 14635 106 - 1 CCAGAUCCAAGAUGCCAUAUGCCAGAUAUAGUGGCGCACUUUGGAUGUCGAUGUGGAGUUGAUGCCGCGAGGCGCCGUUAGUAUUUAUUGAUGGCGGUUGUUCGAC ....(((((((.(((.....((((.......))))))).)))))))((((((((((........)))))((.((((((((((....)))))))))).))..))))) ( -37.20) >consensus CCAGAUCCAAGAUGCCAUAUGCCAGAUGGAGUGUUGCACUUUGGAUGUGGAUGUGGAGUUGAUGCCGCGAGGCACCGUUAGUAUUUAUUGAUGGCGGUUGUUCGAC (((.(((((((.(((.((((.((....)).)))).))).))))))).))).......(((((((((....))))((((((((....)))))))).......))))) (-30.82 = -32.90 + 2.08)
Location | 2,702,666 – 2,702,758 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 84.77 |
Mean single sequence MFE | -26.10 |
Consensus MFE | -20.17 |
Energy contribution | -20.24 |
Covariance contribution | 0.07 |
Combinations/Pair | 1.14 |
Mean z-score | -2.09 |
Structure conservation index | 0.77 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.904944 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2702666 92 + 20766785 GGCAUCAACUCCACAUCCACAUCCAAAGUGCAACACUCCAUCUGGCAUAUGGCAUCUUGGAUCU--------------GGGAUUUACAGCCUUCCAUCUUCUGCCG ((((.............((.((((((..(((......((....))......)))..)))))).)--------------)(((..........)))......)))). ( -23.10) >DroSec_CAF1 17554 99 + 1 GGCAUCAACUCCGCAUCCACAUCCAAAGUGCAAAACUCCAUCUGGCAUAUGGCAACUUGGAUCUGGGA-------UCUGGGAUCUACAGCCUUCCAUCUUCUGCCU ((((.......((.((((..((((((..(((......((....))......)))..))))))...)))-------).))(((..........)))......)))). ( -25.60) >DroSim_CAF1 14959 99 + 1 GGCAUCAACUCCACAUCCACAUCCAAAGCGCAACACUCCAUCUGGCAUAUGGCAUCUUGGAUCUGGGA-------UCUGGGAUCUACAGCCUUCCAUCUUCUGCCU ((((.......((.((((..((((((...((......((....))......))...))))))...)))-------).))(((..........)))......)))). ( -22.90) >DroEre_CAF1 14997 88 + 1 GGCAUC-----------CACAUCCAAAGUGCGCCACUCCAUCUGGCAUAUGGCAUCUUGGAUCUGGGA-------UCUGGGAUCUACAGCCUUCCAUCUUCUGCCU ((((((-----------((.((((((..(((((((.......)))).....)))..)))))).)))).-------..(((((.........))))).....)))). ( -27.90) >DroYak_CAF1 14675 106 + 1 GGCAUCAACUCCACAUCGACAUCCAAAGUGCGCCACUAUAUCUGGCAUAUGGCAUCUUGGAUCUGGGAUCUUGGAUCUGGGAUCCACAGCUUUCCAUCUUCUGCCU ((((................((((((..(((((((.......)))).....)))..))))))((((((((((......))))))).)))............)))). ( -31.00) >consensus GGCAUCAACUCCACAUCCACAUCCAAAGUGCAACACUCCAUCUGGCAUAUGGCAUCUUGGAUCUGGGA_______UCUGGGAUCUACAGCCUUCCAUCUUCUGCCU ((((.......................((((.............))))..(((....(((((((.((((.....)))).)))))))..)))..........)))). (-20.17 = -20.24 + 0.07)
Location | 2,702,705 – 2,702,795 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 91.18 |
Mean single sequence MFE | -30.44 |
Consensus MFE | -29.77 |
Energy contribution | -29.64 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.11 |
Mean z-score | -1.21 |
Structure conservation index | 0.98 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.797102 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2702705 90 + 20766785 AUCUGGCAUAUGGCAUCUUGGAUCU--------------GGGAUUUACAGCCUUCCAUCUUCUGCCGUGGACCAAACGCCGGAAGUCUUUGUUUGGGCAUUCGC .((((((.(((((((...((((.((--------------(.......)))...)))).....)))))))(......))))))).((((......))))...... ( -26.40) >DroSec_CAF1 17593 97 + 1 AUCUGGCAUAUGGCAACUUGGAUCUGGGA-------UCUGGGAUCUACAGCCUUCCAUCUUCUGCCUUGGACCAACCGCCGGAAGUCUUUGUUUGGGCAUUCGC .((((((....((((...((((.((((((-------((...))))).)))...)))).....))))..((.....)))))))).((((......))))...... ( -29.80) >DroSim_CAF1 14998 97 + 1 AUCUGGCAUAUGGCAUCUUGGAUCUGGGA-------UCUGGGAUCUACAGCCUUCCAUCUUCUGCCUUGGACCAACCGCCGGAAGUCUUUGUUUGGGCAUUCGU .((((((....((((...((((.((((((-------((...))))).)))...)))).....))))..((.....)))))))).((((......))))...... ( -29.80) >DroEre_CAF1 15025 97 + 1 AUCUGGCAUAUGGCAUCUUGGAUCUGGGA-------UCUGGGAUCUACAGCCUUCCAUCUUCUGCCUUGGACCAACCGCCGGAAGUCUUUGUUUGGGCAUUCGC .((((((....((((...((((.((((((-------((...))))).)))...)))).....))))..((.....)))))))).((((......))))...... ( -29.80) >DroYak_CAF1 14714 104 + 1 AUCUGGCAUAUGGCAUCUUGGAUCUGGGAUCUUGGAUCUGGGAUCCACAGCUUUCCAUCUUCUGCCUUGGACCAACCGCCGGAAGUCUUUGUUUGGGCAUUUGC .((((((....((((...((((.((((((((((......))))))).)))...)))).....))))..((.....)))))))).((((......))))...... ( -36.40) >consensus AUCUGGCAUAUGGCAUCUUGGAUCUGGGA_______UCUGGGAUCUACAGCCUUCCAUCUUCUGCCUUGGACCAACCGCCGGAAGUCUUUGUUUGGGCAUUCGC .((((((....(((....(((((((.((((.....)))).)))))))..))).((((..........))))......)))))).((((......))))...... (-29.77 = -29.64 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:59 2006