| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,982,686 – 15,982,776 |
| Length | 90 |
| Max. P | 0.656113 |
| Location | 15,982,686 – 15,982,776 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 79.06 |
| Mean single sequence MFE | -18.27 |
| Consensus MFE | -12.47 |
| Energy contribution | -12.17 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.656113 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15982686 90 + 20766785 AUUUACAUAACAGCUUAAUUAAAACGAAGUGGA---UCUUUCGAUUGCAAUGUGUAACUAACACGUUACACAAUGCAAUUACAGCAG-GACG------------------AG ............(((.........(((((....---..)))))((((((.((((((((......)))))))).))))))...)))..-....------------------.. ( -22.40) >DroPse_CAF1 43635 94 + 1 AUUUGCAUAACAUCUUAAUCAAAAAGGAAUUGCCAUUUUUGUGAUUGCAAUUUGUAGCAAACACGUUGCACAAUGCAAUUACAUCACAGUCG------------------AG ....(((.....((((........))))..)))......((((((((((.(.((((((......)))))).).)))))))))).........------------------.. ( -19.80) >DroEre_CAF1 44829 94 + 1 AUUUACAUAACAGCUUAAUUAAAACGAAGUGGA---UCUUUUGAUUGCAAUUUGUAACUAACACGUUACACAAUGCAAUUACAGCAG-GACG---------GACA-----AG ............(((..........((((....---.))))((((((((.(.((((((......)))))).).)))))))).)))..-....---------....-----.. ( -16.20) >DroYak_CAF1 46786 99 + 1 AUUUACAUAACAACUUAAUUAAAACGAAGUGGA---UCUUUUGAUUGCAAUUUGUAACUAACACGUUACACAAUGCAAUUACAGCAG-GACG---------GAUUCUCCGUU .........................((((....---.))))((((((((.(.((((((......)))))).).))))))))......-((((---------(.....))))) ( -19.10) >DroAna_CAF1 39200 103 + 1 AUUUACAUAACAGCUUAAUUAAAAUGAAUUGGA---UCUUUCGAUUGCAAUUUGUAACUAACACGUUGCACAAUGCAAUUACAUCAG-GACUCAACAGGACGACG-----AG ............................(((..---((((..(((((((.(.((((((......)))))).).))))))).....))-))..)))..........-----.. ( -16.40) >DroPer_CAF1 44106 94 + 1 AUUUGCAUAACAUCUUAAUCAAAAAGGAAUUGCCAUUUUUGUGAUUGCAAUUUGUAGCAAACACGUUGCACAAUGCCAUUACAUCACAGUCG------------------AG ....(((.....((((........))))..)))......((((((.(((.(.((((((......)))))).).))).)))))).........------------------.. ( -15.70) >consensus AUUUACAUAACAGCUUAAUUAAAACGAAGUGGA___UCUUUUGAUUGCAAUUUGUAACUAACACGUUACACAAUGCAAUUACAGCAG_GACG__________________AG ..........................................(((((((.(.((((((......)))))).).)))))))................................ (-12.47 = -12.17 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:33 2006