Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,978,429 – 15,978,572 |
Length | 143 |
Max. P | 0.940299 |
Location | 15,978,429 – 15,978,538 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.77 |
Mean single sequence MFE | -24.44 |
Consensus MFE | -18.56 |
Energy contribution | -18.80 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.15 |
Mean z-score | -1.51 |
Structure conservation index | 0.76 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.530177 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15978429 109 + 20766785 AAUUAAAGCUCCGCAGGGA----AAAUAGAGGAAAUUCCUCGUUCAACUUUGACUGCACCUGUUCGAACAUCUUUCCU-------UUUAUUUUCCACUUUGCUAAGUGGCAACAGCAUAA ............(((((((----((...((((.....))))(((((((..((....))...))).))))...))))))-------).......((((((....)))))).....)).... ( -25.50) >DroSec_CAF1 34197 109 + 1 AAUUAAAGCUCCGCAGGGA----AAACAGAGGAAAUUCCUCGCUCAACUUUGACUGCACCUGUUCGAAGUUCUUUCCU-------UUUAUUUUCCACUUUGCUAAGUGGCAACAGCAUAA ............(((((((----((...((((.....))))....((((((((..((....)))))))))).))))))-------).......((((((....)))))).....)).... ( -27.10) >DroSim_CAF1 34370 109 + 1 AAUUAAAGCUCCGCAGGGA----AAACAGAGGAAAUUCCUCGCUCAACUUUGACUGCACCUGUUCGAAGUUCUUUCCU-------UUUAUUUUCCACUUUGCUAAGUGGCAACAGCAUAA ............(((((((----((...((((.....))))....((((((((..((....)))))))))).))))))-------).......((((((....)))))).....)).... ( -27.10) >DroEre_CAF1 40587 109 + 1 AAUUAAAGCUCCGCAGGGA----AAAAAGUUGAAAUUCCUCGCUUAACUUCGACUGCACCUGCCCGAAGUUCGUUCCU-------UUUAUUUUUCACUUUGCAAAGUGGCAACAGCAUAA .......(((..(((((((----(..((((.((......))))))(((((((...((....)).)))))))..)))))-------)........(((((....)))))))...))).... ( -22.10) >DroYak_CAF1 42333 120 + 1 AAUUAAAGCUCCGCAGGGAGAAAAAAAAGUUGAAAUUCCUCGCUUAACUUUGACUGCACCUGUUCGAACUUCCUUCCUCUUAGUUUUUAUUUUUCACUUUGCCAAGUGGCAACAGCAUAA .......(((..(((((..(.....((((((((..........)))))))).....).)))))..(((((...........)))))............(((((....))))).))).... ( -20.40) >consensus AAUUAAAGCUCCGCAGGGA____AAAAAGAGGAAAUUCCUCGCUCAACUUUGACUGCACCUGUUCGAAGUUCUUUCCU_______UUUAUUUUCCACUUUGCUAAGUGGCAACAGCAUAA .......(((..(((((...........((((.....))))((............)).)))))..............................((((((....))))))....))).... (-18.56 = -18.80 + 0.24)
Location | 15,978,465 – 15,978,572 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 89.71 |
Mean single sequence MFE | -27.75 |
Consensus MFE | -23.72 |
Energy contribution | -23.56 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.17 |
Mean z-score | -1.77 |
Structure conservation index | 0.85 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.940299 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15978465 107 - 20766785 AAAGGCUUGACUGUCACAGCUUUAAGAGGACUACUUAUGCUGUUGCCACUUAGCAAAGUGGAAAAUAAA-------AGGAAAGAUGUUCGAACAGGUGCAGUCAAAGUUGAACG ...((((((((((.(((........(((.....)))...(((((.((((((....))))))........-------..(((.....))).))))))))))))).)))))..... ( -26.60) >DroSec_CAF1 34233 107 - 1 AAAGGCUUGACUGUCACAGCUUUAAAAGGACAACUUAUGCUGUUGCCACUUAGCAAAGUGGAAAAUAAA-------AGGAAAGAACUUCGAACAGGUGCAGUCAAAGUUGAGCG ...((((((((((.(((........(((.....)))...(((((.((((((....))))))........-------..(((.....))).))))))))))))).)))))..... ( -26.40) >DroSim_CAF1 34406 107 - 1 AAAGGCUUGACUGUCACAGCUUUAAAAGGACUACUUAUGCUGUUGCCACUUAGCAAAGUGGAAAAUAAA-------AGGAAAGAACUUCGAACAGGUGCAGUCAAAGUUGAGCG ...((((((((((.(((........(((.....)))...(((((.((((((....))))))........-------..(((.....))).))))))))))))).)))))..... ( -26.40) >DroEre_CAF1 40623 106 - 1 GAAGGCUUGGCUGUCACUGCUUUAA-AGUACUACUUAUGCUGUUGCCACUUUGCAAAGUGAAAAAUAAA-------AGGAACGAACUUCGGGCAGGUGCAGUCGAAGUUAAGCG ....((((((((.(((((((....(-((.....)))...(((((..(((((....))))).........-------.....((.....)))))))..))))).)))))))))). ( -27.00) >DroYak_CAF1 42373 114 - 1 AAGGGCUUGACUGUCACUGCUUUAAAAGGACUACUUAUGCUGUUGCCACUUGGCAAAGUGAAAAAUAAAAACUAAGAGGAAGGAAGUUCGAACAGGUGCAGUCAAAGUUAAGCG ....((((((((...(((((.......(((((.(((...((.(((((....)))))(((...........))).))...)))..)))))........)))))...)))))))). ( -32.36) >consensus AAAGGCUUGACUGUCACAGCUUUAAAAGGACUACUUAUGCUGUUGCCACUUAGCAAAGUGGAAAAUAAA_______AGGAAAGAACUUCGAACAGGUGCAGUCAAAGUUGAGCG ...((((((((((.(((........(((.....)))...(((((.((((((....)))))).................(((.....))).)))))))))))))).))))..... (-23.72 = -23.56 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:30 2006