| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,970,602 – 15,970,697 |
| Length | 95 |
| Max. P | 0.500000 |
| Location | 15,970,602 – 15,970,697 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 80.42 |
| Mean single sequence MFE | -24.33 |
| Consensus MFE | -12.15 |
| Energy contribution | -12.60 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.50 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15970602 95 - 20766785 UGGGGGGGGGGGGGGGG-GGCUUGGGGCAGCGAUGUGACAUUGCCGGAAACUCC--UGCCAAGAAAUUGGCAGCCAAAUUUAAAUAAAAAACUCUUGU ..((((((((((.....-(((.((..(((....)))..))..))).....))))--)(((((....)))))....................))))).. ( -28.50) >DroPse_CAF1 30919 84 - 1 AGAG-----------GAGAGG-CAGAGAAAUGGAAUGACAUUGCCGGAAACUCCACAGCCAAGAAAUUGGCAGAGAAAUUUAAAUAAAAA--UCUUGU ...(-----------(((.((-((.....(((......))))))).....))))...(((((....))))).((((..(((....)))..--)))).. ( -20.10) >DroSec_CAF1 26577 84 - 1 UUGG-----------GG-GGCUUGGGGCAGCGAUGUGACAUUGCCGGAAACUCC--UGCCAAGAAAUUGGCAGCCAAAUUUAAAUAAAAAACUCUUGU ((((-----------..-(((.((..(((....)))..))..)))(....)..(--((((((....)))))))))))..................... ( -25.60) >DroSim_CAF1 26735 84 - 1 UGGG-----------GG-GGCUUGGGGCAGCGAUGUGACAUUGCCGGAAACUCC--UGCCAAGAAAUUGGCAGCCAAAUUUAAAUAAAAAACUCUUGU .(((-----------((-(((.((..(((....)))..))..)))(....)..(--((((((....)))))))..................))))).. ( -25.90) >DroEre_CAF1 33093 83 - 1 UUGG-----------AG-GGG-UGGGGCAGCGCUGUGACAUUGCCGGAAACUCC--UGCCAAGAAAUUGGCAGCCAAAUUUAAAUAAAAAACUCUUGU ((((-----------((-(((-(..(((((.(......).)))))....)))))--)(((((....)))))..))))..................... ( -25.40) >DroAna_CAF1 26395 80 - 1 -CGA----------AGG-AGUACGGGGGAGCAA--UGACAUUGGCGGAAACUCC--UGCCAAGAAAUUGGCAUCGAAAUUUAAAUAA--AACUCUUGU -...----------(((-(((..((((..((..--........)).....))))--((((((....))))))...............--.)))))).. ( -20.50) >consensus UGGG___________GG_GGCUUGGGGCAGCGAUGUGACAUUGCCGGAAACUCC__UGCCAAGAAAUUGGCAGCCAAAUUUAAAUAAAAAACUCUUGU .........................(((.................(....)......(((((....))))).)))....................... (-12.15 = -12.60 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:27 2006