Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,967,696 – 15,967,790 |
Length | 94 |
Max. P | 0.881750 |
Location | 15,967,696 – 15,967,790 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 82.37 |
Mean single sequence MFE | -34.15 |
Consensus MFE | -21.21 |
Energy contribution | -21.30 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.19 |
Mean z-score | -3.17 |
Structure conservation index | 0.62 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.881750 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15967696 94 - 20766785 AUUGGAUAUCCAUCGACUGCAGUUGAU-------CGUAGACGGAUUCAAUGCAUACAAA-GC----UGCGGCGGCUGCGGAUUGAUGGAGCUUCAGGACAGAUUUU .(((((..(((((((((((((((((.(-------(((((.(..................-))----)))))))))))))).))))))))..))))).......... ( -34.67) >DroSec_CAF1 23517 93 - 1 AUUGGAUAUCCAUCGACUGCAGUUGAU-------CGUAGGUGGAUUCAAUGCAUACAAA-GC----UGA-GCGGCUGCGGAUUGAUGGAGCUUCUGGACAGAUUUU .(..((..(((((((((((((((((.(-------(((..(((...........)))...-))----.))-.))))))))).))))))))...))..)......... ( -30.50) >DroSim_CAF1 23737 93 - 1 AUUGGAUAUCCAUCGACUGCAGUUGAU-------CGUAGGUGGAUUCAAUGCAUACAAA-GC----UGA-ACGGCUGCGGAUUGAUGGAGCUUCGGGACAGAUUUU .(((((..(((((((((((((((((.(-------(((..(((...........)))...-))----.))-.))))))))).))))))))..))))).......... ( -29.00) >DroEre_CAF1 30037 92 - 1 AUUGGAUAUCCAUCGACUGCAGUUGAU-------CGUAGGUGGCUUCAAUGCAUACAAA-GC----UGG-UCGGCUGCGGAUUGAUGGAGCUUCAGGACAGAUUU- .(((((..(((((((((((((((((((-------(((..(((((......)).)))...-))----.))-)))))))))).))))))))..))))).........- ( -37.80) >DroYak_CAF1 31211 96 - 1 AUUGGAUAUCCAUCGACUGCAGUUGAU-------CGUAGGUGGAUUCAAUGCAUACAAAAGC-UGGUGG-UCGGCUGCGGAUUGAUGGAGCUUCAGGACAGAUUU- .(((((..(((((((((((((((((((-------((..(((...................))-)..)))-)))))))))).))))))))..))))).........- ( -35.61) >DroAna_CAF1 23377 101 - 1 AUUGGACUCCCAACGACUGCACUUUAUGGUAGCUUGUAGGUGGAU--GAUGCCACCUAA-CCGUAUAGA-GCAGCUGUGGAUUGUUUGAAAUUCCGCAAGGAUUU- .(..(((..(((.((.((((.((.((((((......(((((((..--....))))))))-))))).)).-)))).)))))...)))..)...(((....)))...- ( -37.30) >consensus AUUGGAUAUCCAUCGACUGCAGUUGAU_______CGUAGGUGGAUUCAAUGCAUACAAA_GC____UGA_GCGGCUGCGGAUUGAUGGAGCUUCAGGACAGAUUU_ .(((((..(((((((((((((((((..........(((...........)))...((.........))...))))))))).))))))))..))))).......... (-21.21 = -21.30 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:26 2006