Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,961,345 – 15,961,445 |
Length | 100 |
Max. P | 0.806351 |
Location | 15,961,345 – 15,961,445 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 69.07 |
Mean single sequence MFE | -18.92 |
Consensus MFE | -10.65 |
Energy contribution | -11.32 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.49 |
Structure conservation index | 0.56 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.806351 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15961345 100 + 20766785 AACUC-----ACCAGCAUCCCACCACCCAA-CC--AACACCCAUCUACCGAUGUUGGC-UGCAU-----GCGAAAUUCAUCGAAUUCAUAAAAUGGAUUUAUGAAGAGCGCUCU ....(-----(((((((((...........-..--..............)))))))).-))...-----(((...(((((.((((((((...)))))))))))))...)))... ( -21.73) >DroGri_CAF1 107363 104 + 1 GACUC-----C---UUUGCCAACCCCUUUGCCGAUCGCUGCCAUCUGUUCGAGUUUGCUUGCAUAUUAAACAAAAUUCAUCGAAAUCAUAAAAUGGAUUUAUGAAGUGAACG-- .....-----.---.................((.(((((........(((((.((((.(((.....))).)))).....))))).(((((((.....)))))))))))).))-- ( -14.60) >DroSec_CAF1 17293 78 + 1 ----------------------------AACCC--ACCACCCAUCUACCGAUUUUGGC-UGCAU-----GCGAAAUUCAUCGAAUUCAUAAAAUGGAUUUAUGAAGAGCGCUCU ----------------------------....(--((((...(((....)))..))).-))...-----(((...(((((.((((((((...)))))))))))))...)))... ( -15.50) >DroSim_CAF1 17215 86 + 1 AACC--------------------AGCCAACCC--ACCACCCAUCUACCGAUGUUGGC-UGCAU-----GCGAAAUUCAUCGAAUUCAUAAAAUGGAUUUAUGAAGAGCGCUCU ...(--------------------(((((((..--.......(((....)))))))))-))...-----(((...(((((.((((((((...)))))))))))))...)))... ( -24.10) >DroEre_CAF1 23887 85 + 1 GCCCC----------------ACCUC-----CG--AACACCCAGCUUUCCAUGUUGGC-UGCAU-----GCGAAAUUCAUCGAAUUCAUAAAAUGGAUUUAUGAAGAGCGCUCU .....----------------.....-----..--..((.(((((.......))))).-))...-----(((...(((((.((((((((...)))))))))))))...)))... ( -19.80) >DroYak_CAF1 24640 101 + 1 GCCCCACCUAUCCACCUGCCCACCUC-----CC--AACGCCCACCAUUCCAUGUUGGC-UGCAU-----GCGAAAUUCAUCGAAUUCAUAAAAUGGAUUUAUGAAGAGCGCUCU ..........................-----..--...(((.((........)).)))-.....-----(((...(((((.((((((((...)))))))))))))...)))... ( -17.80) >consensus GACCC________________ACCAC__AA_CC__AACACCCAUCUACCCAUGUUGGC_UGCAU_____GCGAAAUUCAUCGAAUUCAUAAAAUGGAUUUAUGAAGAGCGCUCU .....................................................................(((...(((((.((((((((...)))))))))))))...)))... (-10.65 = -11.32 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:25 2006