Locus 4879

Sequence ID 2R_DroMel_CAF1
Location 15,956,307 – 15,956,406
Length 99
Max. P 0.640129
window7826

overview

Window 6

Location 15,956,307 – 15,956,406
Length 99
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 72.67
Mean single sequence MFE -24.50
Consensus MFE -8.56
Energy contribution -9.88
Covariance contribution 1.32
Combinations/Pair 1.06
Mean z-score -1.76
Structure conservation index 0.35
SVM decision value 0.22
SVM RNA-class probability 0.640129
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15956307 99 - 20766785
UUUUCCUCCGCCCGUCACGUGCUGCCUCGCAUAAACAUCCAUGUGGGUGUGCAUACACAUACACGUAAGCAUACAUACUCG-UAUACCCCACGGAAGG------AC
...((((((.........((((......))))..........((((((((((.(((........))).))))))(((....-)))...)))))).)))------). ( -25.90)
>DroSec_CAF1 11836 81 - 1
UUUUCCUCCGCCCGUCACGUGCUGACUCUCAUAAACAUCCAUGUGGGUGUGCAC------------------ACAUACGCG-UAUACCCCACGGAAGG------AC
...(((((((...((((.....))))...............((.((((((((.(------------------......).)-)))))))))))).)))------). ( -24.50)
>DroSim_CAF1 11837 81 - 1
UUUUCCUCCGCCCGUCACGUGCUGCCUCUCAUAAACAUCCAUGUGGGUGUGCAC------------------ACAUACGCG-UAUACCCCACGGAAGG------AC
...((((..((.((...)).))...............(((.((.((((((((.(------------------......).)-))))))))).))))))------). ( -22.40)
>DroEre_CAF1 18472 89 - 1
UUUUCCUCCGCCCGUCACGUGCUGGCUCCCAUAAACAUCCAUGUGGGUAUGCGUACACA----------CUCACACACUCG-UACACCCCACGGAAGG------AC
...((((..(((.((.....)).)))...........(((.((.((((.((((......----------..........))-)).)))))).))))))------). ( -22.29)
>DroAna_CAF1 10891 101 - 1
GUCUCCUCCUGCCGUCACGUGCUCACUCUCAUAAACAUCCAUGUGGGUGUCUUUAUGU-----CCCAAAGAGGACUACAAGUUAUGGCCCUCAGUAUGUGCGUGUC
..........((((.((((((((......(((((((((((....))))))..))))).-----......((((.(((.......))).)))))))))))))).)). ( -27.40)
>consensus
UUUUCCUCCGCCCGUCACGUGCUGACUCUCAUAAACAUCCAUGUGGGUGUGCAUA_________________ACAUACGCG_UAUACCCCACGGAAGG______AC
....((((((...((((.....))))........((((((....)))))).........................................))).)))........ ( -8.56 =  -9.88 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:20 2006