Locus 4878

Sequence ID 2R_DroMel_CAF1
Location 15,956,188 – 15,956,278
Length 90
Max. P 0.698843
window7825

overview

Window 5

Location 15,956,188 – 15,956,278
Length 90
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 84.87
Mean single sequence MFE -31.22
Consensus MFE -23.56
Energy contribution -24.12
Covariance contribution 0.56
Combinations/Pair 1.10
Mean z-score -2.38
Structure conservation index 0.75
SVM decision value 0.35
SVM RNA-class probability 0.698843
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15956188 90 + 20766785
UGUGAGCUCGCGCAUAACAACGGGU--------AAGGCACUCCGAAGCUCGUCGAGCUG-UUGUGGCUGACAUUAAAAGCAAAAGGCGCGAGUGAAGCA
.((..(((((((((((((..(((((--------.....)).))).(((((...))))))-)))).(((.........))).....))))))))...)). ( -32.20)
>DroSec_CAF1 11717 90 + 1
UGUGAGCUCGCGCAUAACAACGGGA--------AAGGCACUCCGGAGCUCCUCGAGCUG-UUGUGGCUGACAUUAAAAGCAAAAGGCGCGAGUGAAGCA
.((..((((((((...(((((.(((--------.......)))..(((((...))))))-)))).(((.........))).....))))))))...)). ( -32.50)
>DroSim_CAF1 11710 98 + 1
UGUGAGCUCGCGCAUAACAACGGGAAAACGGUAAAGGCACUCCGGAGCUCCUCGAGCUG-UUGUGGCUGACAUUAAAAGCAAAAGGCGCGAGUGAAGCA
.((..((((((((...(((((.......(((..........))).(((((...))))))-)))).(((.........))).....))))))))...)). ( -33.00)
>DroEre_CAF1 18353 90 + 1
UGUGAGCUCGCGCAUAACAACGGGA--------AAGGCGCUCCCAAGCUCCUCGAGCUG-UUGUGGCUGACAUUAAAAGCAAAAGGCGCGAGUGAAGCA
.((..((((((((...(((((((((--------.......)))).(((((...))))))-)))).(((.........))).....))))))))...)). ( -36.00)
>DroYak_CAF1 17884 90 + 1
UGUGAGCUCGCGCAUAACAACGGGA--------AAGGCACUCCGGAGCUCCUCGAGCUG-UUGUGGCUGACAUUAAAAGCAAAAGGCGCGAGUGAAGCA
.((..((((((((...(((((.(((--------.......)))..(((((...))))))-)))).(((.........))).....))))))))...)). ( -32.50)
>DroPer_CAF1 13972 72 + 1
UGUGAGCUCGCGCAUAACAAGAGG-------------CGUU--------------GUUGUUUGUGGCAGACGCUAAAAGCAGAAGGCGCGACUGAAGCA
.((.((.(((((((((((......-------------.)))--------------))(((((.((((....)))).)))))....))))))))...)). ( -21.10)
>consensus
UGUGAGCUCGCGCAUAACAACGGGA________AAGGCACUCCGGAGCUCCUCGAGCUG_UUGUGGCUGACAUUAAAAGCAAAAGGCGCGAGUGAAGCA
.((..((((((((........................(((.....(((((...)))))....)))(((.........))).....))))))))...)). (-23.56 = -24.12 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:19 2006