Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,953,971 – 15,954,071 |
Length | 100 |
Max. P | 0.606391 |
Location | 15,953,971 – 15,954,071 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 83.77 |
Mean single sequence MFE | -32.10 |
Consensus MFE | -20.80 |
Energy contribution | -22.23 |
Covariance contribution | 1.43 |
Combinations/Pair | 1.19 |
Mean z-score | -2.51 |
Structure conservation index | 0.65 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606391 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15953971 100 + 20766785 GCGUGUUGUGAAACCUCGACAUCGCCACUAGCCCAUAACAGUA------ACAGUUACGAUUGCCGUAACUACGGCAGCAGUUGCAGCCAUAGA--AGUGGCAGUUGCA ((((((((.(....).))))).)))...............(((------((.((.((..(((((((....)))))))..)).)).(((((...--.))))).))))). ( -34.00) >DroSec_CAF1 9497 100 + 1 GCGUGUUGUGAAACCUCGACAUCGCCACUAGCCCAUAACAGUA------ACAGUUACGAUUGCCGUAACUACGGCAGCAGUUGCAGCCAUAGA--AGUGGCAGUUGCA ((((((((.(....).))))).)))...............(((------((.((.((..(((((((....)))))))..)).)).(((((...--.))))).))))). ( -34.00) >DroSim_CAF1 9498 100 + 1 GCGUGUUGUGAAACCUCGACAUCGCCACUAGCCCAUAACAGUA------ACAGUUACGAUUGCCGUAACUACGGCAGCAGUUGCAGCCAUAGA--AGUGGCAGUUGCA ((((((((.(....).))))).)))...............(((------((.((.((..(((((((....)))))))..)).)).(((((...--.))))).))))). ( -34.00) >DroEre_CAF1 16144 106 + 1 GCAUGUUGCGAAACCUCGACAUCGCCACUAGCCCAUAACAGUAACAGUAACAGUAACGAUUGCCGUAACAACGGCAGCAGUUGCAGCCAUGGA--AGUGGCAGUUGCA ((((((((.(....).)))))).)).....................(((((.(((((..(((((((....)))))))..))))).(((((...--.))))).))))). ( -36.20) >DroYak_CAF1 15569 102 + 1 GCAUGUUGUGAAACCUCGACAUCGCCACUAGCCCAUAACAGUA------ACAGUAACGAUUGGCGUAGCAACGGCAGCAGUUGCAGCCAUAGAAAAGUGGCAGUUGUA ((((((((.(....).)))))).)).........(((((....------...(((((..(((.(((....))).)))..))))).(((((......))))).))))). ( -29.30) >DroAna_CAF1 8691 85 + 1 --UCGUUG-GAAACCUCGACAUCGUCACUGGCCCAUAACAGUA------ACAAUAACCAUUGCAGUUGCAA------------CAGCCAUAAU--AGCAACUGCUGGU --(((..(-....)..)))....((.((((........)))).------))....((((..((((((((..------------..........--.)))))))))))) ( -25.12) >consensus GCGUGUUGUGAAACCUCGACAUCGCCACUAGCCCAUAACAGUA______ACAGUAACGAUUGCCGUAACAACGGCAGCAGUUGCAGCCAUAGA__AGUGGCAGUUGCA ((((((((.(....).)))))).((((((.......................((((((.....))))))...(((.((....)).))).......))))))....)). (-20.80 = -22.23 + 1.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:18 2006