| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,943,257 – 15,943,349 |
| Length | 92 |
| Max. P | 0.500000 |
| Location | 15,943,257 – 15,943,349 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 82.70 |
| Mean single sequence MFE | -27.34 |
| Consensus MFE | -15.72 |
| Energy contribution | -14.97 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.57 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15943257 92 + 20766785 UCUUCAGCGG--------GAAGCGACUUCUUCUACUGCUGUGCCACAGCCAUCAUCGUCAUAUUGAACUUUGAUGCUGGCACGUUUCCCUGG-CUUUUUGU .....(((((--------(((((((.....)).......((((((..((.((((...((.....))....)))))))))))))))))))..)-))...... ( -26.60) >DroSec_CAF1 70577 91 + 1 UCUUCAGCGG--------GAAGCGACUUCUUCUACUGCCGGG-CACAGCCAUCAUCGUCAUAUUGAACUUUGAUGCUGGCACGUUUCCCUGG-CUUUUUGU .....(((((--------((((((...........(((...)-))..((((.(((((.............))))).)))).))))))))..)-))...... ( -25.82) >DroSim_CAF1 69930 91 + 1 UCUUCAGCGG--------GAAGCGACUUCUUCUACUGCCGGG-CACAGCCAUCAUCGUCAUAUUGAACUUUGAUGCUGGCACGUUUCCCUGG-CUUUUUGU .....(((((--------((((((...........(((...)-))..((((.(((((.............))))).)))).))))))))..)-))...... ( -25.82) >DroAna_CAF1 65174 91 + 1 UCUUCAGUAAAAGGAGCAGAAACGA---------UGGCAGUGCCAUUGCCAUCAUCGUCAUAUUGAACUUUGAUGCUGGCACGUUUCUCUGGGCUUCUUG- ..........(((((((((((((((---------((((...)))))(((((.(((((.............))))).))))))))))))....))))))).- ( -31.12) >consensus UCUUCAGCGG________GAAGCGACUUCUUCUACUGCCGGG_CACAGCCAUCAUCGUCAUAUUGAACUUUGAUGCUGGCACGUUUCCCUGG_CUUUUUGU ..................((((((...........((........))((((.(((((.............))))).)))).)))))).............. (-15.72 = -14.97 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:17 2006