Locus 4873

Sequence ID 2R_DroMel_CAF1
Location 15,941,142 – 15,941,258
Length 116
Max. P 0.670965
window7820

overview

Window 0

Location 15,941,142 – 15,941,258
Length 116
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 91.67
Mean single sequence MFE -50.27
Consensus MFE -39.85
Energy contribution -41.97
Covariance contribution 2.11
Combinations/Pair 1.03
Mean z-score -2.39
Structure conservation index 0.79
SVM decision value 0.29
SVM RNA-class probability 0.670965
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15941142 116 + 20766785
----UGUGUGGGUGUCGCUCUUAGUGUGGGAGUGCCUUGACAAGGCCAUUCGUUUCCCUCUGUGGGAAGGAGUGUCCUGAUGCCUGGUUAAUUCUGCCACGCACACAUGCUCACAGGCUC
----((((((((((((((((((.....)))))).........(((.(((((.((((((.....))))))))))).)))))))))((((.......))))..)))))).(((....))).. ( -41.70)
>DroSec_CAF1 68510 120 + 1
CGGGUCUGUGAGUGUGGCUCUGAGUGUGGGAGUGCCUUGACAAGGACAUUCGUUUCCCUCUGCGAGAAGGAGUGUCCUGAUGCCUGGUUAAUGCUGGCACGCACACAUGCUCACAGGCUC
.(((((((((((((((.(((.......))).((((.......(((((((((.((..(......)..)).)))))))))..((((.(((....))))))).)))).))))))))))))))) ( -52.80)
>DroSim_CAF1 67836 120 + 1
CGGGUCUGUGGGUGUGGCUCUGAGUGUGGGAGUGCCUUGACAAGGACAUUCCUUUCCCCCUGCGAGAAGGAGUGUCCUGAUGCCUGGUUAAUGCUGGCACGCACACAUGCUCACAGGCUC
.(((((((((((((((.(((.......))).((((.......((((((((((((..(......)..))))))))))))..((((.(((....))))))).)))).))))))))))))))) ( -56.30)
>consensus
CGGGUCUGUGGGUGUGGCUCUGAGUGUGGGAGUGCCUUGACAAGGACAUUCGUUUCCCUCUGCGAGAAGGAGUGUCCUGAUGCCUGGUUAAUGCUGGCACGCACACAUGCUCACAGGCUC
.(((((((((((((((.......((((.((...(((..(...(((((((((.((((.(.....).)))))))))))))....)..))).....)).)))).....))))))))))))))) (-39.85 = -41.97 +   2.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:14 2006