Locus 4871

Sequence ID 2R_DroMel_CAF1
Location 15,939,262 – 15,939,353
Length 91
Max. P 0.715315
window7818

overview

Window 8

Location 15,939,262 – 15,939,353
Length 91
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 90.24
Mean single sequence MFE -23.50
Consensus MFE -20.67
Energy contribution -21.67
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.91
Structure conservation index 0.88
SVM decision value 0.39
SVM RNA-class probability 0.715315
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15939262 91 + 20766785
AGCAGAGUGCGAAUGGAAUUGCAUUCCGGCCAUUGGAGCAAAAUCAAACCGAAACGUGCAUCCAAAAAUCAACGC-----CUGAUUUCCAUCAGUA
.((.((((((((......))))))))..))..((((((((...((.....))....))).)))))..........-----(((((....))))).. ( -21.80)
>DroSec_CAF1 66666 95 + 1
AGCAGAGUGCGAAAGGAAUUGCAUUCCGGCCAUUGGAGCAAAAUCA-UCCGAAACGUGCAUCCAAAAAUCAACGAUUCUGCUGAUUCCCAACAGCA
((((((((.((...(((((...))))).....((((((((...((.-...))....))).))))).......)))))))))).............. ( -24.10)
>DroSim_CAF1 65995 95 + 1
AGCAGAGUGCGAAAGGAAUUGCAUUCCGGCCAUUGGAGCAAAUUCA-UCCAAAACGUGCAUCCAAAAAUCAACGAUUCUGCUGAUUCCCAUCAGCA
.((.((((((((......))))))))..))..((((((((..((..-.....))..))).)))))..............((((((....)))))). ( -24.60)
>consensus
AGCAGAGUGCGAAAGGAAUUGCAUUCCGGCCAUUGGAGCAAAAUCA_UCCGAAACGUGCAUCCAAAAAUCAACGAUUCUGCUGAUUCCCAUCAGCA
.((.((((((((......))))))))..))..((((((((...((.....))....))).)))))..............((((((....)))))). (-20.67 = -21.67 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:12 2006