Locus 4870

Sequence ID 2R_DroMel_CAF1
Location 15,939,065 – 15,939,160
Length 95
Max. P 0.994120
window7816 window7817

overview

Window 6

Location 15,939,065 – 15,939,160
Length 95
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 97.92
Mean single sequence MFE -47.93
Consensus MFE -47.90
Energy contribution -47.90
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.52
Structure conservation index 1.00
SVM decision value 1.84
SVM RNA-class probability 0.979528
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15939065 95 + 20766785
GCCUAUUGGGCGGCCGGGAGCGUUU-UUGGCGCUCGGCUUUCGCCGACCCACUCGGCCAGCAUCCGUGCCGAGUGGAUGUAUGCCGCUCGAGCUUC
((...(((((((((...((((((..-...))))))(((....)))...((((((((((.......).)))))))))......)))))))))))... ( -47.20)
>DroSec_CAF1 66468 96 + 1
GCCUAUUGGGCGGCCGGGAGCGUUUUUUGGCGCUCGGCUUUCGCCGACCCACUCGGCCAGCAUCCGUGCCGAGUGGAUGGGUGCCGCUCGAGCUUC
((...(((((((((((((.(((((....)))))(((((....)))))....))))))).((((((((.((....)))))))))).))))))))... ( -48.70)
>DroSim_CAF1 65797 96 + 1
GCCUAUUGGGCGGCCGGGAGCGUUUUUUGGCGCUCGGCUUUCGCCGACCCACUCGGCCAGCAUCCGUGCCGAGUGGAUGUAUGCCGCUCGAGCUUC
((...(((((((((...(((((((....)))))))(((....)))...((((((((((.......).)))))))))......)))))))))))... ( -47.90)
>consensus
GCCUAUUGGGCGGCCGGGAGCGUUUUUUGGCGCUCGGCUUUCGCCGACCCACUCGGCCAGCAUCCGUGCCGAGUGGAUGUAUGCCGCUCGAGCUUC
((...(((((((((...(((((((....)))))))(((....)))...((((((((((.......).)))))))))......)))))))))))... (-47.90 = -47.90 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 15,939,065 – 15,939,160
Length 95
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 97.92
Mean single sequence MFE -47.30
Consensus MFE -47.40
Energy contribution -47.40
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -3.49
Structure conservation index 1.00
SVM decision value 2.45
SVM RNA-class probability 0.994120
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15939065 95 - 20766785
GAAGCUCGAGCGGCAUACAUCCACUCGGCACGGAUGCUGGCCGAGUGGGUCGGCGAAAGCCGAGCGCCAA-AAACGCUCCCGGCCGCCCAAUAGGC
.......(.(((((....(((((((((((.(((...)))))))))))))).(((....)))(((((....-...)))))...))))).)....... ( -47.10)
>DroSec_CAF1 66468 96 - 1
GAAGCUCGAGCGGCACCCAUCCACUCGGCACGGAUGCUGGCCGAGUGGGUCGGCGAAAGCCGAGCGCCAAAAAACGCUCCCGGCCGCCCAAUAGGC
.......(.(((((....(((((((((((.(((...)))))))))))))).(((....)))(((((........)))))...))))).)....... ( -47.40)
>DroSim_CAF1 65797 96 - 1
GAAGCUCGAGCGGCAUACAUCCACUCGGCACGGAUGCUGGCCGAGUGGGUCGGCGAAAGCCGAGCGCCAAAAAACGCUCCCGGCCGCCCAAUAGGC
.......(.(((((....(((((((((((.(((...)))))))))))))).(((....)))(((((........)))))...))))).)....... ( -47.40)
>consensus
GAAGCUCGAGCGGCAUACAUCCACUCGGCACGGAUGCUGGCCGAGUGGGUCGGCGAAAGCCGAGCGCCAAAAAACGCUCCCGGCCGCCCAAUAGGC
.......(.(((((....(((((((((((.(((...)))))))))))))).(((....)))(((((........)))))...))))).)....... (-47.40 = -47.40 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:11 2006