Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,927,931 – 15,928,045 |
Length | 114 |
Max. P | 0.595718 |
Location | 15,927,931 – 15,928,045 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 76.90 |
Mean single sequence MFE | -31.34 |
Consensus MFE | -22.88 |
Energy contribution | -23.00 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.08 |
Mean z-score | -1.47 |
Structure conservation index | 0.73 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.595718 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15927931 114 - 20766785 GUGCGUCCAGCACUUUCUAUUGACAGGGGACGUGGCCGUUUGGAAGGAAUGCUGUGGCAUUCUCCACUGAAAAAAAAUAUUUAAGCCCCUAAGUACUACCGAUAAGCAUGCACU ((((((((....((.((....)).)).))))...((...((((.((((((((....))))))...............((((((......)))))))).))))...))..)))). ( -29.50) >DroSim_CAF1 54130 105 - 1 GUGCGUCCAGCACUUUCUAUUGACAGGGGACGUGGCCGUUUGGAAGGAGUGCUGUGGCAUUCGGCACUGAAAA-AAAUAUUCAA--------GAACUACCUAUAAGCAUGCACU ((((((((....((.((....)).)).))))......(((((..((((((((((.......)))))))(((..-.....)))..--------......))).)))))..)))). ( -29.80) >DroEre_CAF1 55045 96 - 1 GUGCGUCCAGCACUUUCUAUUGACAGGGGACGUGGCCGCUUGGAAAGAGUGGUGUGGCAUUCUACACUGGAA--ACAUACAUGAGCC-A---AAAGU------------GCACA ((((((((....((.((....)).)).)))).(((((((((.....)))))((((((....))))))((...--.)).......)))-)---.....------------)))). ( -31.70) >DroYak_CAF1 57390 98 - 1 GUGCGUCCAGCACUUUCUAUUGACAGGGGACGUGGUCCUUUGGAAAGAGUGCUGUGGCAUGCUGCACCGAAAA-AAAUACAUGAGCA-A---AAAGUA-----------GCACG (((((((((((((((....((..((((((((...))))))))..)))))))))).))).((((.((.......-.......))))))-.---......-----------)))). ( -34.34) >consensus GUGCGUCCAGCACUUUCUAUUGACAGGGGACGUGGCCGUUUGGAAAGAGUGCUGUGGCAUUCUGCACUGAAAA_AAAUACAUAAGCC_A___AAACUA___________GCACU (((((((((((((((((((....(((....).))......)))))))..))))).))).(((......)))......................................)))). (-22.88 = -23.00 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:04 2006