Locus 4864

Sequence ID 2R_DroMel_CAF1
Location 15,926,741 – 15,926,842
Length 101
Max. P 0.505481
window7808

overview

Window 8

Location 15,926,741 – 15,926,842
Length 101
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 90.04
Mean single sequence MFE -20.95
Consensus MFE -18.04
Energy contribution -18.04
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.24
Structure conservation index 0.86
SVM decision value -0.06
SVM RNA-class probability 0.505481
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15926741 101 + 20766785
UGUUGCUAUAUCCAUUGUUGUUGGAUCUUUGGCUAUAUAUAUAUAUAUAUAU-GUACUGCUUAUCGACAUCUCCGGCUGCUGGCAGCAUUUAUUUGUCUUCA
((((((((((.((...(.((((((......(((..((((((((....)))))-)))..)))..)))))).)...)).)).)))))))).............. ( -23.70)
>DroSec_CAF1 54365 91 + 1
UGUUGCUAUAUCCAUUGUUGCUGGAUCUUUGGCUAUAC----------AUAC-GUACUGCUUAUCGACAUCUCCGGCUGUUGGCAGCAUUUAUUUGUCUUCG
((((((((...........((((((((...(((..(((----------....-)))..)))....))....))))))...)))))))).............. ( -20.44)
>DroSim_CAF1 52956 91 + 1
UGUUGCUAUAUCCAUUGUUGCUGGAUCUUUGGCUAUAC----------GUAC-GUACUGCUUAUCGACAUCUCCGGCUGCUGGCAGCAUUUAUUUGUCUUCG
((((((((........((.((((((((...(((..(((----------....-)))..)))....))....)))))).)))))))))).............. ( -22.30)
>DroEre_CAF1 53828 92 + 1
UGUUGCUAUAUCCAUUGUUGCUGGAUCCUUGGCUAUAC----------GUACUAUACUGCUUAUCGACAUCUCCGGCUGAUGGCAGCAUUUAUUUGUCUUCG
(((((((((..........((((((....((.(.(((.----------(((......))).))).).))..))))))..))))))))).............. ( -19.50)
>DroYak_CAF1 56134 87 + 1
UGUUGCUAUAUCCAUUGUUGCUGGAUCUUUGGCUAUAC----------GUA-----CUGCUUAUCGACAUCUCCGGCUGCUGGCAGCAUUUAUUUGUCUUCG
((((((((........((.((((((((...(((.....----------...-----..)))....))....)))))).)))))))))).............. ( -18.80)
>consensus
UGUUGCUAUAUCCAUUGUUGCUGGAUCUUUGGCUAUAC__________GUAC_GUACUGCUUAUCGACAUCUCCGGCUGCUGGCAGCAUUUAUUUGUCUUCG
(((.((((.(((((.......)))))...)))).)))............................((((......((((....)))).......)))).... (-18.04 = -18.04 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:03 2006