Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,925,596 – 15,925,694 |
Length | 98 |
Max. P | 0.792787 |
Location | 15,925,596 – 15,925,694 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 79.25 |
Mean single sequence MFE | -23.23 |
Consensus MFE | -18.07 |
Energy contribution | -18.07 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.08 |
Mean z-score | -1.37 |
Structure conservation index | 0.78 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.792787 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15925596 98 + 20766785 ACAU-----CCUGCCCACUGCACCCUUUUUUCCCACCGCCCCUGUGUCGCCUGUUGUCAUUGAGCAUAAUACCGUUAUCUUUCUGUGACAGCAGCGA-UGUCGC- ....-----..(((.....))).....................(..((((.(((((((((.(((.(((((...))))))))...)))))))))))))-..)...- ( -22.40) >DroPse_CAF1 54901 94 + 1 UC-UCAUAUUCUCCCUCUUAUACUCUU---------UGGGGCUGUGGCU-GUGUUGUCAUUGAGCAUAAUACCGUUAUCUCUGUGUGACAGCAGCGUUUGUCGCA ..-(((((...((((............---------.)))).)))))..-.(((((((((.(((.(((((...))))))))...)))))))))(((.....))). ( -24.42) >DroSim_CAF1 51339 98 + 1 ACAU-----CCUGCCCACUGCACCCUUUUUUCCCACCGCCCCUGUGUCGCCUGUUGUCAUUGAGCAUAAUACCGUUAUCUUUCUGUGACAGCAGCGA-UGUCGC- ....-----..(((.....))).....................(..((((.(((((((((.(((.(((((...))))))))...)))))))))))))-..)...- ( -22.40) >DroEre_CAF1 52706 103 + 1 UCAUCACAUUCUGGCCACUGCACCCUUUUUUCCCACCGCCCCUGUGUCGACUGUUGUCAUUGAGCAUAAUACCGUUAUCUUUCUGUGACAGCAGCGA-UGUCGC- .((((((((...(((......................)))...)))).(.((((((((((.(((.(((((...))))))))...)))))))))))))-))....- ( -24.45) >DroYak_CAF1 54905 103 + 1 ACAUCCUGUCCUGUCCACUGCACCCUUUUUUCCCACCGCCCCUGUGUCGACUGUUGUCAUUGAGCAUAAUACCGUUAUCUUUCUGUGACAGCAGCGA-UGUCGC- ...........................................(..(((.((((((((((.(((.(((((...))))))))...)))))))))))))-..)...- ( -21.60) >DroPer_CAF1 55063 94 + 1 UC-UCAUGUUCUCCCUCUUAUACUCUU---------UGGGGCUGUGGCU-GUGUUGUCAUUGAGCAUAAUACCGUUAUCUCUGUGUGACAGCAGCGUUUGUCGCA ..-........((((............---------.))))..((((((-((((((((((.(((.(((((...))))))))...))))))))).))...))))). ( -24.12) >consensus ACAUCAU_UCCUGCCCACUGCACCCUUUUUUCCCACCGCCCCUGUGUCG_CUGUUGUCAUUGAGCAUAAUACCGUUAUCUUUCUGUGACAGCAGCGA_UGUCGC_ ...........................................((((((.((((((((((.(((.(((((...))))))))...)))))))))))))....))). (-18.07 = -18.07 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:02 2006