Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,922,528 – 15,922,628 |
Length | 100 |
Max. P | 0.985712 |
Location | 15,922,528 – 15,922,628 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 93.68 |
Mean single sequence MFE | -34.10 |
Consensus MFE | -30.67 |
Energy contribution | -31.17 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.07 |
Mean z-score | -2.02 |
Structure conservation index | 0.90 |
SVM decision value | 2.02 |
SVM RNA-class probability | 0.985712 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15922528 100 + 20766785 CGUCAGCGGACAAAAGUGGCCAGGAAGUGCAAGUGCCAACGGAAACUUUUAAUUGUUUCUGCUGUUGCCUUUGCGCUUCCGUUUCUUGCAG-------CACGUCCAA .......((((....(((....(((((((((((.((((.(((((((........))))))).))..)).)))))))))))((.....))..-------))))))).. ( -35.50) >DroSec_CAF1 50257 100 + 1 CGUCAGCGGGCAAAAGUGGCCAGGAAGUGCAAGUGCCAACGGAAACUUUUAAUUGUUUCUGCUGUUGCCUUUGCGCUUCCGUUUCUUGCAG-------CACGUCCAA ((((.((((.((....)).)).(((((((((((.((((.(((((((........))))))).))..)).))))))))))).......)).)-------.)))..... ( -35.70) >DroSim_CAF1 48360 100 + 1 CGUCAGCGGGCAAAAGUGGCCAGGAAGUGCAAGUGCCAACGGAAACUUUUAAUUGUUUCUGCUGUUGCCUUUGCGCUUCCGUUUCUUGCAG-------CACGUCCAA ((((.((((.((....)).)).(((((((((((.((((.(((((((........))))))).))..)).))))))))))).......)).)-------.)))..... ( -35.70) >DroEre_CAF1 49696 100 + 1 UGUCAGCAGGCAAAAGUGGCCAGGAAGUGCAAGUGCCAACGGAAACUUUUAAUUGUUUCUGCUGUUGCCUUUGCGCUUCCGUUUCUUGCAG-------CACGUCCAA .....((((((.......))).(((((((((((.((((.(((((((........))))))).))..)).)))))))))))......)))..-------......... ( -35.70) >DroYak_CAF1 51798 107 + 1 UGUCAGCAGGCAAAAGUGGCCAGGAAGUGCAAGUGCCAACGGAAACUUUUAAUUGUUUCUGCUGUUGCCUUUGCGCUUCCGUUUCUUGCAGCACGCAGCACGUCCAA .....((((((.......))).(((((((((((.((((.(((((((........))))))).))..)).)))))))))))......))).((.....))........ ( -36.90) >DroAna_CAF1 43060 100 + 1 UGUCAGCGGGCAAAAGUGGUCAGGAAGUGCAAGUGCCAACGGAAAGUUUUAAUUGUUUCUGCUUUUGCCUUUCAGCUUCCGUUUCUUGCUG-------CAUGGCCAA .(((((((((((((((..(.(((...(.((....)))(((.....)))....)))...)..)))))))))...(((...........))))-------).))))... ( -25.10) >consensus CGUCAGCGGGCAAAAGUGGCCAGGAAGUGCAAGUGCCAACGGAAACUUUUAAUUGUUUCUGCUGUUGCCUUUGCGCUUCCGUUUCUUGCAG_______CACGUCCAA .....((((((.......))).(((((((((((.((((.(((((((........))))))).))..)).)))))))))))......))).................. (-30.67 = -31.17 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:59 2006