Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,700,034 – 2,700,127 |
Length | 93 |
Max. P | 0.920991 |
Location | 2,700,034 – 2,700,127 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 82.52 |
Mean single sequence MFE | -27.58 |
Consensus MFE | -19.18 |
Energy contribution | -19.94 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.04 |
Mean z-score | -2.26 |
Structure conservation index | 0.70 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.920991 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2700034 93 - 20766785 GUUUCAUUACACUUCUGUGGGUGGCAGCUGCUUUGGAUCACCAGAUCCGUAGAUCCUCAGCUU----UAUCUGCACUAUGGCCCACCAAAAACUAAU ((((.....(((....)))(((((..(((.....(((((....)))))((((((.........----.)))))).....))))))))..)))).... ( -25.50) >DroSec_CAF1 14949 93 - 1 GUUUCAUUACACUUCUGUGGGUGGCAGCUGCUGCGGAUCCUCGGACCCAUAGAUCCUCAGCUC----AAUCUGCACUGUGGCCCACCGAAAACUAAU ............(((.((((((.((((..((((.(((((...(....)...))))).))))..----........)))).)))))).)))....... ( -30.90) >DroSim_CAF1 12352 93 - 1 GUUUCAUUACACUUCUGUGGGUGGCAGCUGCCUCGGAUCCUCAGAUCCAUAGAUCCUCAGCUC----CAUCUGCACUGUGGCCCACCGAAAACUAAU ............(((.((((((.((((.(((...(((((....)))))..((((.........----.))))))))))).)))))).)))....... ( -30.10) >DroEre_CAF1 12380 84 - 1 GUUUCAUUACACUUCUGUGGGUGGCAGCUGCCAUGGAUGCCCGA--------GUCCUCAGCUA----UAUCGGC-CUAUGGCCCACCGAAAACUAAU .((((....(((....)))((((..(((((....((((......--------)))).))))).----....(((-(...))))))))))))...... ( -26.40) >DroYak_CAF1 12034 89 - 1 GUUUCAUUGCACUUCUGUGGGUGGCAGCUGCUUCGAUUGCCCAG--------GUCCUCAGCUACAUAUAUCUGCACUGUGGCCCACCGAAAACUAAU ............(((.((((((.((((.(((...(((......(--------((.....)))......))).))))))).)))))).)))....... ( -25.00) >consensus GUUUCAUUACACUUCUGUGGGUGGCAGCUGCUUCGGAUCCCCAGA_CC_UAGAUCCUCAGCUA____UAUCUGCACUGUGGCCCACCGAAAACUAAU .((((....(((....)))(((((.(((((....(((((............))))).)))))..........((......)))))))))))...... (-19.18 = -19.94 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:50 2006