Locus 4857

Sequence ID 2R_DroMel_CAF1
Location 15,917,577 – 15,917,675
Length 98
Max. P 0.573858
window7799

overview

Window 9

Location 15,917,577 – 15,917,675
Length 98
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.63
Mean single sequence MFE -30.60
Consensus MFE -17.10
Energy contribution -17.27
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.94
Structure conservation index 0.56
SVM decision value 0.08
SVM RNA-class probability 0.573858
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15917577 98 - 20766785
ACACGCAACUGG---AAGCUGGCAACUGUAA--------------ACUC---A--GCUGCGUAACGGAUGCGGAAACGGAAAUCCGAUAUUAUUGCGUUUGUAUUGUAUUAGAAGUGCGU
..(((((.((((---..((.(....).))..--------------..))---)--).)))))..(((((.((....))...)))))........((((((.((......)).)))))).. ( -27.00)
>DroPse_CAF1 47029 113 - 1
--AUCGAGCU-G---CAGCU-GCAACUGUAGUUUUGGAGGAGCAAAAUCCCCAGGACUGCGUAACGGAUGCGGAAACGGAAAUCCGAUAUUAUUGCGUUUGUAUUCUAUUAGAAGUGCGU
--...(((.(-(---(((.(-((((..((((((((((.(((......)))))))))))))....(((((.((....))...)))))......))))).)))))))).............. ( -39.00)
>DroEre_CAF1 43499 98 - 1
AUACGCAACUGG---AAGCUGGCAACUGUAA--------------ACUC---A--GCUGCGUAACGGAUGCGGAAACGGAAAUCCGAUAUUAUUGCGUUUGUAUUGUAUUAGAAGUGCGU
.((((((.((((---..((.(....).))..--------------..))---)--).)))))).(((((.((....))...)))))........((((((.((......)).)))))).. ( -28.40)
>DroYak_CAF1 46719 98 - 1
AUACGCAACUGG---AAGCUGGCAACUGUAA--------------ACUC---A--GCUGCGUAACGGAUGCGGAAACGGAAAUCCGAUAUUAUUGCGUUUGUAUUGUAUUAGAAGUGCGU
.((((((.((((---..((.(....).))..--------------..))---)--).)))))).(((((.((....))...)))))........((((((.((......)).)))))).. ( -28.40)
>DroAna_CAF1 38310 101 - 1
---AAAAACUGAAAAAAACUGGCAACUGUAA--------------CCUCACAA--GCUGCGUAACGGAUGCGGAAACGGAAAUCCGAUAUUAUUGCGUUUGUAUUGUAUUAGAAGUGCGU
---..................(((.(((..(--------------(...((((--((.(((((((((((.((....))...)))))...))).)))))))))...))..)))...))).. ( -21.70)
>DroPer_CAF1 47180 112 - 1
--AUCGAGCU-G---CAGCU-GCAACUGUAGUUUUGGAGGAGCAAAAUCCCCAGGACUGCGAAACGGAUGCGGAAACGGAAAUCCGAUAUUAUUGCGUUUGUAUUCUAU-AGAAGUGCGU
--...(((.(-(---(((.(-((((.(((((((((((.(((......))))))))))))))...(((((.((....))...)))))......))))).))))))))...-.......... ( -39.10)
>consensus
__ACGCAACUGG___AAGCUGGCAACUGUAA______________ACUC___A__GCUGCGUAACGGAUGCGGAAACGGAAAUCCGAUAUUAUUGCGUUUGUAUUGUAUUAGAAGUGCGU
.....................((((..(((..........................((((((.....))))))...(((....))).)))..))))....(((((........))))).. (-17.10 = -17.27 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:54 2006