| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,908,505 – 15,908,618 |
| Length | 113 |
| Max. P | 0.643216 |
| Location | 15,908,505 – 15,908,618 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.64 |
| Mean single sequence MFE | -29.30 |
| Consensus MFE | -24.12 |
| Energy contribution | -24.32 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.643216 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15908505 113 - 20766785 UCAAUAUUUCAGCGACCGCGUCGUUCUGGCGACCAAUCCUGCCGCUGCAAUCGGUUGCCAUUACACUCACGGCCCCCAUUUGGAAAAUCGGAAACACAGCGAUAAUGCUGUCC------- ......((((..((((((.(..((..((((((((.((..(((....))))).))))))))..))...).)))...((....))....))))))).(((((......)))))..------- ( -28.40) >DroSec_CAF1 36307 112 - 1 UCAAUAUUUCAGCGACCGCGUCGUUCUGGCGACCAAUCCUGCCGCUGCAAUCGGUUGCCAUUACACUCGCG-CCCCCAUUUGGAAAAUCGGAAACACAGCGAUAAUGCUGUCC------- .............(((.((((.((..((((((((.((..(((....))))).))))))))..))..((((.-...((....))......(....)...))))..)))).))).------- ( -31.70) >DroSim_CAF1 33758 112 - 1 UCAAUAUUUCAGCGACCGCGUCGUUCUGGCGACCAAUCCUGCCGCUGCAAUCGGUUGCCAUUACACUCACG-CCCCCAUUUGGAAAAUCGGAAACACAGCGAUAAUGCUGUCC------- .............(((.((((.((..((((((((.((..(((....))))).))))))))..)).....((-(..((....))......(....)...)))...)))).))).------- ( -29.80) >DroEre_CAF1 34391 115 - 1 UCCAUAUUUCAGCGACCACGUCGUUC-GGCGACCAAUCCUGCCACUGCAAUCGGUUGCCAUUACACUCACG-CCCCCAU-U--CAAAUCGGAAACACUGCGAUAAUGCUGUCCAGCUUUC (((.......((((((...)))))).-(((((((.((..(((....))))).)))))))............-.......-.--......)))....(((.((((....)))))))..... ( -25.80) >DroYak_CAF1 37452 109 - 1 UCAAUAUUUCAGCGACCACGUCGUUC-GGCGACCAAUCCUGCCACUGCAAUCGGUUGCCAUUACACCCACG-CCCCCAUUU--CAAAUCGGAAACGGAGCGAUAAUGCUGUCC------- .........(((((.....(((((((-(((((((.((..(((....))))).)))))))............-.........--.....((....)))))))))..)))))...------- ( -30.80) >consensus UCAAUAUUUCAGCGACCGCGUCGUUCUGGCGACCAAUCCUGCCGCUGCAAUCGGUUGCCAUUACACUCACG_CCCCCAUUUGGAAAAUCGGAAACACAGCGAUAAUGCUGUCC_______ .........(((((.....((((((..(((((((.((..(((....))))).)))))))..............................(....)..))))))..))))).......... (-24.12 = -24.32 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:46 2006