Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,907,186 – 15,907,292 |
Length | 106 |
Max. P | 0.625990 |
Location | 15,907,186 – 15,907,292 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 95.71 |
Mean single sequence MFE | -21.07 |
Consensus MFE | -19.28 |
Energy contribution | -19.44 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.06 |
Structure conservation index | 0.91 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625990 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15907186 106 - 20766785 AUAACAGCUAUUUGAUUUUAUUUAUUUUGUUUUC-------AU-AUUUUCUGCGAAUAAGUUGGCCGCUUUGUGGCACACCAGCAAAUUAAGUUAAUAAUAAAACAGUUGCUGG ....((((((((((........(((.........-------))-).......))))).)))))(((((...)))))...(((((((.....(((........)))..))))))) ( -20.76) >DroSec_CAF1 35031 106 - 1 AUAACAGCUAUUUGAUUUUAUUUAUUUUGUUUUC-------AU-AUUUUCUGCGAAUAAGUUGGCCGCUUUGUGGCACACCAACAAAUUAAGUUAAUAAUAAAACAGUUGCUGG ....((((...(((.(((((((....((((((.(-------(.-......)).))))))(((((..(((....)))...))))).............))))))))))..)))). ( -20.30) >DroSim_CAF1 32487 106 - 1 AUAACAGCUAUUUGAUUUUAUUUAUUUUGUUUUC-------AU-AUUUUCUGCGAAUAAGUUGGCCGCUUUGUGGCACACCAGCAAAUUAAGUUAAUAAUAAAACAGUUGCUGG ....((((((((((........(((.........-------))-).......))))).)))))(((((...)))))...(((((((.....(((........)))..))))))) ( -20.76) >DroEre_CAF1 33056 106 - 1 AUAACAGCUAUUUGAUUUUAUUUAUUUUGUUUUC-------AU-AUUUUCUGCGAAUAAGUUGGCCGCUUUGUGGCACACCAGCAAAUUAAGUUAAUAAUAAAACAGUUGCUGG ....((((((((((........(((.........-------))-).......))))).)))))(((((...)))))...(((((((.....(((........)))..))))))) ( -20.76) >DroYak_CAF1 36097 106 - 1 AUAACAGCUAUUUGAUUUUAUUUAUUUUGUUUUC-------AU-AUUUUCUGCGAAUAAGUUGGCCGCUUUGUGGCACACCAGCAAAUUAAGUUAAUAAUAAAACAGUUGCUGG ....((((((((((........(((.........-------))-).......))))).)))))(((((...)))))...(((((((.....(((........)))..))))))) ( -20.76) >DroAna_CAF1 28597 114 - 1 AUAACAGCUAUUUGAUUUUAUUUAUUUCAUUUUUUUUAUGCAUUUUUUUUUGCGAAUAAGUUGGCCGCUUUGUGGCACACCAGCAAAUUAAGUUAAUAAUAAAACAGUUGCUGG ....(((((...(((..(.....)..))).........((((........))))....)))))(((((...)))))...(((((((.....(((........)))..))))))) ( -23.10) >consensus AUAACAGCUAUUUGAUUUUAUUUAUUUUGUUUUC_______AU_AUUUUCUGCGAAUAAGUUGGCCGCUUUGUGGCACACCAGCAAAUUAAGUUAAUAAUAAAACAGUUGCUGG ....((((((((((......................................))))).)))))(((((...)))))...(((((((.....(((........)))..))))))) (-19.28 = -19.44 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:45 2006