Locus 485

Sequence ID 2R_DroMel_CAF1
Location 2,699,891 – 2,699,999
Length 108
Max. P 0.998314
window920

overview

Window 0

Location 2,699,891 – 2,699,999
Length 108
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 97.16
Mean single sequence MFE -31.98
Consensus MFE -32.14
Energy contribution -32.18
Covariance contribution 0.04
Combinations/Pair 1.06
Mean z-score -1.88
Structure conservation index 1.01
SVM decision value 3.06
SVM RNA-class probability 0.998314
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2699891 108 - 20766785
CGGUAAUCAAAAUAUU-UCGGGCUUUGGCAAGUGUUUUUAUGGCUAGACGAGUCAUGUUUUAUGUGCUGGAGCGGGUCGUAAGCCUAUUUGGUUAUGACUUCAUUCCGC
................-.(((((((..(((.(((....(((((((.....)))))))...))).)))..))))(((((((((.((.....)))))))))))....))). ( -34.00)
>DroSec_CAF1 14805 109 - 1
CGGUAAUCAAAUUAUUUUCGGGCUUUGGCAAGUGUUUUUAUGGCUAGACGAGUCAUGUUUUAUGUGCUGGAGCGGGUCGUAAGCCUAUUUGGUUAUGACUUCAUUCCGC
..................(((((((..(((.(((....(((((((.....)))))))...))).)))..))))(((((((((.((.....)))))))))))....))). ( -34.00)
>DroSim_CAF1 12208 109 - 1
CGGUAAUCAAAUUAUUUUCGGGCUUUGGCAAGUGUUUUUAUGGCUAGACGAGUCAUGUUUUAUGUGCUGGAGCGGGUCGUAAGCCUAUUUGGUUAUGACUUCAUUCCGC
..................(((((((..(((.(((....(((((((.....)))))))...))).)))..))))(((((((((.((.....)))))))))))....))). ( -34.00)
>DroEre_CAF1 12231 109 - 1
CGGUAAUCAAAUUAUUUUCGGGCUUUGGCAAGUGUUUUUAUGGCUAGACAAGUCUUGUUUUAUGUGCUGGAUCAGGUCGUAAGCCUAUUUGGUUAUGACUUCAUUCCGC
(((..............((.(((...(((((((((((........)))))...))))))......))).))..(((((((((.((.....)))))))))))....))). ( -24.30)
>DroYak_CAF1 11890 109 - 1
CGGUAAUCAAAUUAUUUUCGGGCUUUGGCAAGUGUUUUUAUGGCUAGACAAGUCGUGUUUUAUGUGCUGGAGCAGGUCGUAAGCCUAUUUGGUUAUGACUUCAUUCCGC
..................(((((((..(((.(((....(((((((.....)))))))...))).)))..))))(((((((((.((.....)))))))))))....))). ( -33.60)
>consensus
CGGUAAUCAAAUUAUUUUCGGGCUUUGGCAAGUGUUUUUAUGGCUAGACGAGUCAUGUUUUAUGUGCUGGAGCGGGUCGUAAGCCUAUUUGGUUAUGACUUCAUUCCGC
..................(((((((..(((.(((....(((((((.....)))))))...))).)))..))))(((((((((.((.....)))))))))))....))). (-32.14 = -32.18 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:49 2006