| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,906,375 – 15,906,474 |
| Length | 99 |
| Max. P | 0.505116 |
| Location | 15,906,375 – 15,906,474 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.89 |
| Mean single sequence MFE | -28.17 |
| Consensus MFE | -19.34 |
| Energy contribution | -19.68 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.69 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.505116 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15906375 99 - 20766785 UGUCCGCAUAAUUCCAACAGCAUUGUCACCUUAGCAAUGCGCUUAGAAGUUG---------------CCAAAGUCG------CAACCGUUUAGGCAACAUUUUUAUGGCUCAUUAGAGCA ......(((((........(((((((.......)))))))(((((((.((((---------------(.......)------))))..))))))).......)))))((((....)))). ( -28.90) >DroPse_CAF1 33308 120 - 1 GCUGUGCAUAAUUUCAACAGUAUUGUCACCUUAGCAAUGCGCUGGGAAGUUGCCCCCGAAGCAGUCGCCCAAGUCGAGAACACAACCGUUUAGGCAACGUUUUUAUGGCUCAUUAGAGCA ......((((((..((...(((((((.......)))))))..))..).((((((..(((.((....)).....))).((((......)))).))))))....)))))((((....)))). ( -29.90) >DroEre_CAF1 32247 99 - 1 UCUCGGCAUAAUUCCAGCAGCAUUGUCACCUUAGCAAUGCGCUUAGAACUUG---------------CCAGAGUCG------CAACCGUUUAGGCAACAUUUUUAUGGCUCAUUAGAGCA .(((((((...(((.(((.(((((((.......))))))))))..)))..))---------------)).((((((------(....))...(....)........)))))....))).. ( -27.60) >DroYak_CAF1 35246 99 - 1 UCUCCGCAUAAUUUCAGCAGCAUUGUCACCUUAGCAAUGCGCUUAGAAGUUG---------------CCAAAGUCG------CAACCGUUUAGGCAACAUUUUUAUGGCUCAUUAGAGCA ......((((((((.(((.(((((((.......)))))))))).))).((((---------------((.(((.((------....))))).))))))....)))))((((....)))). ( -29.80) >DroAna_CAF1 27745 100 - 1 UCUCCGCAUAAUUCCCGCAGUAUUGUCACCUUAGCAAUGCGCUUGGAAGUUU---------------CCAAAGUCG-----GCAACCGUUUAGGCAACAUUUUUAUGGCUCAUUAGAGCA ......(((((((((.((.(((((((.......)))))))))..))))(((.---------------((.(((.((-----(...)))))).)).)))....)))))((((....)))). ( -25.80) >DroPer_CAF1 33389 120 - 1 GCUGUGCAUAAUUUCAACAGUAUUGUCACCUUAGCAAUGCGCUGGGAAGUUUCCCCCGAAGAAGUCGCCCAAGUCGAGAACACAACCGUUUAGGCAACGUUUUUAUGGCUCAUUAGAGCA ......(((((((((....(((((((.......)))))))...((((....))))..))))..((.(((.(((.((..........))))).))).))....)))))((((....)))). ( -27.00) >consensus UCUCCGCAUAAUUCCAACAGCAUUGUCACCUUAGCAAUGCGCUUAGAAGUUG_______________CCAAAGUCG______CAACCGUUUAGGCAACAUUUUUAUGGCUCAUUAGAGCA ......(((((........(((((((.......)))))))(((((((.((((..............................))))..))))))).......)))))((((....)))). (-19.34 = -19.68 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:44 2006