Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,905,322 – 15,905,430 |
Length | 108 |
Max. P | 0.595157 |
Location | 15,905,322 – 15,905,430 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 72.59 |
Mean single sequence MFE | -14.77 |
Consensus MFE | -11.48 |
Energy contribution | -11.24 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.06 |
Mean z-score | -0.44 |
Structure conservation index | 0.78 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.595157 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15905322 108 - 20766785 UAUGUCCCCG--GCGCAGAGGUGAUAAAUUACCAUCGGCCAAGGUGUCAUAUUAAAACCAA--GCAGCACACACACUCCCACACCCA--------CACGCGCACACACUACCCCCCACAC ..........--((((.(((((((....))))).))......(((((..............--.................)))))..--------...)))).................. ( -16.58) >DroPse_CAF1 32066 100 - 1 UAUGUCCCCGUAGCGUAGAGGUGAUAAAUUACCAUCGGCCAAGGUGUCAUAUUAAAACCAA--AACACUCACACUCUCCCCUCCUCGCCCCUUUUCA------------------UGCUC ((((.....(..(((..((((((((........)))).....(((...........)))..--................))))..)))..)....))------------------))... ( -14.40) >DroEre_CAF1 31164 98 - 1 UAUGUCCCCG--GCGCAGAGGUGAUAAAUUACCAUCGGCCAAGGUGUCAUAUUAAAACCAA--GCAGCACACACACCACCACACCCACCCACACCCA------------------CACAC .........(--((...(((((((....))))).)).)))..(((((..............--.........)))))....................------------------..... ( -14.70) >DroAna_CAF1 26607 97 - 1 UAUGUCCCCA--AAGCAGAGGUGAUAAAUUACCAUCGGCCAAGGUGUCAUAUUAAAACCAGCGUCAGAACACACAC--ACACACCCA--------GAC--------AC-ACC--CCGCUC ..((((....--..((.(((((((....))))).)).))...(((((.............................--..)))))..--------)))--------).-...--...... ( -13.78) >DroPer_CAF1 32162 100 - 1 UAUGUCCCCGUAGCGUAGAGGUGAUAAAUUACCAUCGGCCAAGGUGUCAUAUUAAAACCAA--AACACUCACACUCUCCCCUCCUCGCCCCUUUUCA------------------UGCUC ((((.....(..(((..((((((((........)))).....(((...........)))..--................))))..)))..)....))------------------))... ( -14.40) >consensus UAUGUCCCCG__GCGCAGAGGUGAUAAAUUACCAUCGGCCAAGGUGUCAUAUUAAAACCAA__ACAGCACACACACUCCCACACCCACCC_____CA__________________CGCUC ((((.(.((.....((.(((((((....))))).)).))...)).).))))..................................................................... (-11.48 = -11.24 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:43 2006