| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,905,024 – 15,905,114 |
| Length | 90 |
| Max. P | 0.992521 |
| Location | 15,905,024 – 15,905,114 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 66.53 |
| Mean single sequence MFE | -24.80 |
| Consensus MFE | -10.50 |
| Energy contribution | -10.96 |
| Covariance contribution | 0.46 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.42 |
| SVM decision value | 2.33 |
| SVM RNA-class probability | 0.992521 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15905024 90 - 20766785 ----CAGCCACAAUGUGCCGCCGCCCC--------C----------CCUCCAUGGGUGGAUACCCAC----CUGGUGGCUGCUCAUUUAAACUAUUUAAUAUUGGCACCUGCCAGC ----(((((((...(((...((((((.--------.----------.......)))))).....)))----...)))))))....................(((((....))))). ( -30.90) >DroSec_CAF1 32837 88 - 1 CCACCAGCCACAAUGUGCCGCC-------------C----------CCUUUUU-GGGGGAUGCCCAC----CUGGUGGCUGCUCAUUUAAACUAUUUAAUAUUGGCACCUGCCAGG ....(((((((..((.((..((-------------(----------((.....-)))))..)).)).----...)))))))....................(((((....))))). ( -33.10) >DroEre_CAF1 30845 86 - 1 AUACUAACCACUAUGUGCCGCC------------------------CCUUCAU-GG-GGAUCCCCAC----CUGGUGGCUGCUCAUUUAAACUAUUUAAUAUUGGCACCUGCCAGG .......((...(((.((.(((------------------------((....(-((-(....)))).----..)).))).)).)))................((((....)))))) ( -25.70) >DroYak_CAF1 33785 106 - 1 -----ACCCACAAUGUGCCACACCCCCAACCAGCCCCCAACUUGUCUUUUCAU-GGGGGAUCCCCAC----CUGGUGGCUGCUCAUUUAAACUAUUUAAUAUUGGCACCUGCCAGG -----............................((((((...((......)))-))))).......(----((((..(.(((.((.((((.....))))...))))).)..))))) ( -27.40) >DroPer_CAF1 31795 82 - 1 ACGCACACACACAUGUGUUUAC-----------------------------CU----GUAUCCUCACUCUCCCAUCUGCUGCUCCUUUCAACUAUUUAAUAUUGGCACCCGCCCG- ..(((((......)))))....-----------------------------..----..............................................(((....)))..- ( -6.90) >consensus ___CCAACCACAAUGUGCCGCC_____________C__________CCUUCAU_GG_GGAUCCCCAC____CUGGUGGCUGCUCAUUUAAACUAUUUAAUAUUGGCACCUGCCAGG ..............((((((((........................((......)).((....))........)))))).))...................(((((....))))). (-10.50 = -10.96 + 0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:42 2006