Locus 4845

Sequence ID 2R_DroMel_CAF1
Location 15,896,286 – 15,896,390
Length 104
Max. P 0.982917
window7784

overview

Window 4

Location 15,896,286 – 15,896,390
Length 104
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 92.96
Mean single sequence MFE -30.14
Consensus MFE -26.04
Energy contribution -26.08
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.88
Structure conservation index 0.86
SVM decision value 1.93
SVM RNA-class probability 0.982917
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15896286 104 - 20766785
UGGAGUCUAUGGGCGCAUUAUUAUAGAAAUGUUUGGAAAAAACUUUGCAUUGCCAUCGGGGCUGCAAAAGUGGGAGGCG------AUGAUGAUGAUGCCGAGGUGGAGGC
....((((.(.(((((((((((((...(((((..((......))..)))))(((.((...(((.....)))..))))).------))))))))).)))).).....)))) ( -27.20)
>DroSec_CAF1 24178 110 - 1
UGGAGUCUAUGGGCGCAUUAUUAUAGAAAUGUUUGGAAAAAACUUUGCAUUGCCAUCGGGGCUGCAGAAGUGGAAGGCGAUGGCGAUGAUGAUGAUGCCGAGGUGGAGGC
....((((.(.(((((((((((((...(((((..((......))..)))))(((((((...(..(....)..)....))))))).))))))))).)))).).....)))) ( -35.80)
>DroSim_CAF1 21642 110 - 1
UGGAGUCUAUGGGCGCAUUAUUAUAGAAAUGUUUGGAAAAAACUUUGCAUUGCCAUCGGGGCUGCAAAAGUGGGAGGCGAUGGCGAUGAUGAUGAUGCCGAGGUGGAGGC
....((((.(.(((((((((((((...(((((..((......))..)))))(((((((...(..(....)..)....))))))).))))))))).)))).).....)))) ( -34.70)
>DroEre_CAF1 22166 101 - 1
UAGAGUCUAUGGGCGCAUUAUUAUAGAAAUGUUUGGAAAAAACUUUGCAUUGCCAUCGGGGCUGCAAAAGCGGGAG---------AUGAUGAUGAUGCCGAGGUGGAGGC
....((((.(.(((((((((((((......((((.....))))((((((..(((.....)))))))))........---------))))))))).)))).).....)))) ( -26.90)
>DroYak_CAF1 24951 101 - 1
UAGAGUCUAUGGGCGCAUUAUUAUAGAAAUGUUUGGAAAAAACUUUGCAUUGCCAUCGGGGCUGCUAAAGUGGGAG---------AUGAUGAUGAUGCCGAGGUGGAGGC
....((((.(.(((((((((((((.......(((....)))((((((((..(((.....)))))).))))).....---------))))))))).)))).).....)))) ( -26.10)
>consensus
UGGAGUCUAUGGGCGCAUUAUUAUAGAAAUGUUUGGAAAAAACUUUGCAUUGCCAUCGGGGCUGCAAAAGUGGGAGGCG______AUGAUGAUGAUGCCGAGGUGGAGGC
....((((.(.(((((((((((((......((((.....))))((((((..(((.....))))))))).................))))))))).)))).).....)))) (-26.04 = -26.08 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:40 2006