Locus 4844

Sequence ID 2R_DroMel_CAF1
Location 15,895,811 – 15,895,927
Length 116
Max. P 0.981316
window7783

overview

Window 3

Location 15,895,811 – 15,895,927
Length 116
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 86.64
Mean single sequence MFE -20.76
Consensus MFE -15.18
Energy contribution -15.44
Covariance contribution 0.26
Combinations/Pair 1.15
Mean z-score -2.98
Structure conservation index 0.73
SVM decision value 1.88
SVM RNA-class probability 0.981316
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15895811 116 + 20766785
ACGAAUUAAUAGACAGCGCCUAAUGGGCCACAGGCCACAUAUACUAUAUGUACAUACAUAUGUAUUAUACGUAUAAUUCCCAUAUUUACCCAUUUCUGUUAAUGAUUUCCACAAAA
....(((((((((.........(((((((...)))).)))....((((((((.((((....))))..))))))))...................)))))))))............. ( -21.90)
>DroSec_CAF1 23743 105 + 1
ACGAAUUAAUAGACAGCGCCUAAUGGGCCAAAGCCCACAUAU-----------AUACAUAUGUAUUAUGCGUAUAAUUCUCAUAUUUAUCCAUUUCUGUUAAUGAUUUCCACAAAA
....(((((((((..((((.((((((((....))))((((((-----------....)))))))))).))))((((.........)))).....)))))))))............. ( -21.90)
>DroSim_CAF1 21184 105 + 1
ACGAAUUAAUAGACAGCGCCUAAUGGGCCAAAGCCCACAUAU-----------AUACAUAUGUAUUAUGCGUAUAAUUCCCAUAUUUACCCAUUUCUGUUAAUGAUUUCCACAAAA
....(((((((((..((((.((((((((....))))((((((-----------....)))))))))).))))..(((......)))........)))))))))............. ( -21.30)
>DroEre_CAF1 21669 104 + 1
ACAAAUUAAUAGACAGCGCCUAAUGGGCCAAAGCCCACAUAU-----------ACAUAUACGUACGA-ACGUGUAAUUCCCAUAUUUACCCAUUUCUGUUAAUGAUUUCCACAAAA
....(((((((((..........(((((....))))).....-----------...(((((((....-)))))))...................)))))))))............. ( -21.00)
>DroYak_CAF1 24473 94 + 1
ACAAAUUAAUAGACAGCGCCUAAUGGGCCAAAGCCCACAUAU-----------AUGUAU-----------GUAUAAUUCGCAUAUUUACCCAUUUCUGUUAAUGAUUUCCACAAAA
....(((((((((..........(((((....)))))....(-----------(.((((-----------((.......)))))).))......)))))))))............. ( -17.70)
>consensus
ACGAAUUAAUAGACAGCGCCUAAUGGGCCAAAGCCCACAUAU___________AUACAUAUGUAUUAUACGUAUAAUUCCCAUAUUUACCCAUUUCUGUUAAUGAUUUCCACAAAA
....(((((((((..........(((((....)))))....................((((((.....))))))....................)))))))))............. (-15.18 = -15.44 +   0.26)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:39 2006