| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,894,846 – 15,894,952 |
| Length | 106 |
| Max. P | 0.612209 |
| Location | 15,894,846 – 15,894,952 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 74.45 |
| Mean single sequence MFE | -13.76 |
| Consensus MFE | -10.54 |
| Energy contribution | -10.70 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.70 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.612209 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15894846 106 - 20766785 UCCCGCAGGCAGCACU----CCUCCCUGAUCCAACCUC-CUCGUAUUCCUUGUUUUUUUUUUUUUUUUUUUGCCAACUCAAUUAAAUCUUAUCACAUGAAAGGCGGUCUGA------- ..((((.(((((....----.......((..(((....-..........)))..)).............))))).............(((.((....))))))))).....------- ( -11.19) >DroSec_CAF1 22818 93 - 1 UCCCGCAGGCAGCACC----GCUCCCUGAUCCAAAC----UCGUAUUCUUU----------UUUUUUUUUUGCCAACUCAAUUAAAUCUUAUCACAUGAAAGGCGGACUGA------- (((..((((.(((...----))).))))........----...........----------..........(((...(((................)))..))))))....------- ( -12.89) >DroSim_CAF1 20247 92 - 1 UCCCGCAGGCAGCACC----GCUCCCUGAUCCAAAC----UCGUAUUCCUU----------CUU-UUUUUUGCCAACUCAAUUAAAUCUUAUCACAUGAAAGGCGGACUGA------- ..(((((((.(((...----))).))).........----((((.......----------..(-((..(((......)))..))).........))))...)))).....------- ( -13.07) >DroEre_CAF1 20695 97 - 1 UCCCGCAGGCAGCACCCACCCCUCCCUGCUCCACCC----UCUUCGUUUCU----------UUUUUUUUUUGCCAACUCAAUUAAAUCUUAUCACAUGAAAGGCGGGCUGA------- .(((((.((.((((............))))))...(----(.(((((....----------...(((..(((......)))..))).........))))))))))))....------- ( -16.19) >DroYak_CAF1 23538 87 - 1 UCCCGCAGGCAGCUCC-ACC--------CUCCUCUU----UCUUUAUUU-U----------UUUUUUUUUUGCCAACUCAAUUAAAUCUUAUCACAUGAAAGGCGGGCUGA------- .((((((((.((....-...--------)))))(((----((.......-.----------...(((..(((......)))..)))...........))))))))))....------- ( -14.95) >DroAna_CAF1 15785 97 - 1 UCCCGCAGGCAU----------UCCCAGCUCCACCACCACACCCACACCCA-----------CUUUUUUUUGCCAACUCAAUUAAAUCUUAUCACAUGAAAGGCGGGUGGAAAAAAAA ....((.((...----------..)).))................(((((.-----------((((((.............................)))))).)))))......... ( -14.25) >consensus UCCCGCAGGCAGCACC_____CUCCCUGAUCCAACC____UCGUAUUCCUU__________UUUUUUUUUUGCCAACUCAAUUAAAUCUUAUCACAUGAAAGGCGGGCUGA_______ ..((((.(((((.........................................................))))).............(((.((....)))))))))............ (-10.54 = -10.70 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:37 2006