Locus 4841

Sequence ID 2R_DroMel_CAF1
Location 15,893,228 – 15,893,324
Length 96
Max. P 0.987060
window7780

overview

Window 0

Location 15,893,228 – 15,893,324
Length 96
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 74.08
Mean single sequence MFE -23.74
Consensus MFE -13.99
Energy contribution -14.03
Covariance contribution 0.04
Combinations/Pair 1.27
Mean z-score -2.23
Structure conservation index 0.59
SVM decision value 2.06
SVM RNA-class probability 0.987060
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15893228 96 - 20766785
UAAUUAGUUCGGAUUGAGAUACAAACUCAGUCUCGACUAUCAGUUUGGCAAUACGAUAGGUACGGUCAAUGAAAGGUCAAC--CUGGAGGAA---CUUAAU
.....(((((((((((((.......)))))))).((((.(((..(((((..(((.....)))..))))))))..))))...--......)))---)).... ( -23.90)
>DroSec_CAF1 21207 74 - 1
UAAUUAGUUCGGGUUGAGAUACAAACUCAAUCUCGACUAUCAGUUUGGCAAUACGAUAC---------------GGUCAAG--CUGGAGGA----------
....(((((.((((((((.......)))))))).)))))((((((((((..........---------------.))))))--))))....---------- ( -24.40)
>DroSim_CAF1 18620 81 - 1
UAAUUAGUUCGGGUUGAGAUACAAACUCAGUCUCGACUAUCAGUUUGGCAAUAAGAUAC---------------GGUCAAG--CUGGAGGAA---CUUAAU
.....(((((.(((((((((.........))))))))).((((((((((..........---------------.))))))--))))..)))---)).... ( -25.70)
>DroEre_CAF1 19056 82 - 1
UAAUUAGUUCGGGUUGAGAUACAAGCUCAGUCUCGACUGCCAGUUUGGCGAUUCCAUAC---------------GGUCAG----UGAAGGGUCAACCACAU
.....(((.(((((((((.......))))).)))))))(((.....)))(((((..(((---------------.....)----))..)))))........ ( -20.90)
>DroYak_CAF1 21891 86 - 1
UAAUUAGUUCGGGUUGAGAUAUAAACUCAGCGUUGACUGUCAGUUUGGCGGUUCGAUGC---------------GGUCAAAAUAUGGACGAAAAACGACAU
......(((((((((........))))).((((((((((((.....))))).)))))))---------------...........))))............ ( -23.80)
>consensus
UAAUUAGUUCGGGUUGAGAUACAAACUCAGUCUCGACUAUCAGUUUGGCAAUACGAUAC_______________GGUCAAG__CUGGAGGAA___CUAAAU
....(((((.((((((((.......)))))))).))))).(((((((((..........................))))))..)))............... (-13.99 = -14.03 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:36 2006