Locus 4840

Sequence ID 2R_DroMel_CAF1
Location 15,882,542 – 15,882,637
Length 95
Max. P 0.979244
window7779

overview

Window 9

Location 15,882,542 – 15,882,637
Length 95
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 90.45
Mean single sequence MFE -30.80
Consensus MFE -23.91
Energy contribution -23.99
Covariance contribution 0.08
Combinations/Pair 1.04
Mean z-score -2.61
Structure conservation index 0.78
SVM decision value 1.83
SVM RNA-class probability 0.979244
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15882542 95 + 20766785
UAAAACACUAGCAGACCACAAAAGUGUCGCUGGCAGGGAUUU-------G--AGAAUGCGAAA-UCCUGGGAAAUGCACUCGCUGAGUGUCUGCCAAAAAUGCAC
..........((((((.((....)))))..(((((((.((((-------(--.((.((((...-((....))..)))).))..))))).)))))))....))).. ( -26.80)
>DroSec_CAF1 19637 96 + 1
UAAAACACUAGCAGACCACAAAUGUGUCGCUGGCAGGGAUUU-------G--GGAAUGCGAAAGUCCUGGGAAAUGCACUCGCUGAGUGUCUGCCAAAAAUGCAC
..........((((((.((....)))))..(((((((.(((.-------.--(((.((((....((....))..)))).)).)..))).)))))))....))).. ( -30.90)
>DroSim_CAF1 17071 96 + 1
UAAAACACUAGCAGACCACAAAUGUGUCGCUGGCAGGGAUUU-------G--GGAAUGCGAAAGUCCUGGGAAAUGCACUCGCUGAGUGUCUGCCAAAAAUGCAC
..........((((((.((....)))))..(((((((.(((.-------.--(((.((((....((....))..)))).)).)..))).)))))))....))).. ( -30.90)
>DroEre_CAF1 17407 95 + 1
UAAAACACUUGCAGACCACAAAAGUGUCGCUGGCAGGGAUUU-------G--AAAAUG-GCAAGUCCUGGGAAAUGCACUCGCUGAGUGUCUGCCAAAAAUGCAC
.........(((((((.((....)))))..((((((((((((-------(--......-.)))))))........((((((...))))))))))))....)))). ( -29.60)
>DroYak_CAF1 20184 104 + 1
UAAAACACUUGCAGACCACAAAAGUGUCCCUGGCAGGGAUUUUUUCCAUGGAAACGUG-GCAAAUCCUGGAAAAUGCACUCGCUGAGUGUCUGCCAAAAAUGCAC
.........(((((((.((....)))))..((((((((((((...(((((....))))-).))))))........((((((...))))))))))))....)))). ( -35.80)
>consensus
UAAAACACUAGCAGACCACAAAAGUGUCGCUGGCAGGGAUUU_______G__AGAAUGCGAAAGUCCUGGGAAAUGCACUCGCUGAGUGUCUGCCAAAAAUGCAC
..........((((((.((....)))))..((((((((((((...................))))))........((((((...))))))))))))....))).. (-23.91 = -23.99 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:35 2006