Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,697,151 – 2,697,317 |
Length | 166 |
Max. P | 0.998569 |
Location | 2,697,151 – 2,697,243 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.52 |
Mean single sequence MFE | -30.57 |
Consensus MFE | -19.66 |
Energy contribution | -21.66 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.14 |
Mean z-score | -2.77 |
Structure conservation index | 0.64 |
SVM decision value | 2.85 |
SVM RNA-class probability | 0.997398 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2697151 92 + 20766785 --------------------------GGGAACUAUUUCCCUGCCUGGGGACACACCUGUGCCCCCG--AUGUGGCGCCAACUUUUCCCAUUACGAUAGCCCUUUAUGGGCCAACAAAAUU --------------------------(((((.........(((((((((.(((....))).)))))--....)))).......))))).........((((.....)))).......... ( -28.99) >DroSec_CAF1 11997 92 + 1 --------------------------GGGAACUAUUUCCCUGCCUUGGGACACACCUGUGCCCCCG--AUGUGGCGCCAACUUUUCCCAUUACGAUGGCCCUUUAUGGGCCAACAAAAUU --------------------------(((((.....((((......)))).......(((((....--....)))))......))))).....(.((((((.....)))))).)...... ( -32.30) >DroEre_CAF1 9517 92 + 1 --------------------------GGGAACUAUUUCCCUGCCUGG-GACACACCUGUGCCCCCGGCAUGUGGCGCCAACUUUUCGCAUAACGAUGGCCCU-UAUGGGCCAACAAAAUU --------------------------(((((....)))))((((.((-(.(((....))).))).))))(((.(((.........)))...))).((((((.-...))))))........ ( -36.30) >DroWil_CAF1 12405 116 + 1 GUCGAGGGAGGGCAAGAAAAGAAAAAGAAAACUAUUUC-AUGCAUAAGGACACACCUGCGAACU-U--CUGGAACUCUAACUUUUCCCAUUAUUAUGGCCUUUAAUGGGCCAACAAAAUU ...(.(((((((..(((..((((...((((....))))-.((((...((.....))))))...)-)--)).....)))..)))))))).......((((((.....))))))........ ( -24.00) >DroYak_CAF1 9330 92 + 1 --------------------------GGAAACUAUUUCCCUGCCUGGGGACACACCUGUGCCCCCA--AUGUGGCGCCAACUUUUCCCAUUACGAUGGCCCUUUAUGGGCCAACAAAAUU --------------------------(((((.........(((((((((.(((....))).)))))--....))))......)))))......(.((((((.....)))))).)...... ( -31.26) >consensus __________________________GGGAACUAUUUCCCUGCCUGGGGACACACCUGUGCCCCCG__AUGUGGCGCCAACUUUUCCCAUUACGAUGGCCCUUUAUGGGCCAACAAAAUU ..........................(((((....))))).((((((((.(((....))).)))))......)))....................((((((.....))))))........ (-19.66 = -21.66 + 2.00)
Location | 2,697,151 – 2,697,243 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.52 |
Mean single sequence MFE | -34.32 |
Consensus MFE | -25.26 |
Energy contribution | -25.94 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.24 |
Mean z-score | -2.52 |
Structure conservation index | 0.74 |
SVM decision value | 2.55 |
SVM RNA-class probability | 0.995163 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2697151 92 - 20766785 AAUUUUGUUGGCCCAUAAAGGGCUAUCGUAAUGGGAAAAGUUGGCGCCACAU--CGGGGGCACAGGUGUGUCCCCAGGCAGGGAAAUAGUUCCC-------------------------- .(((.((.((((((.....)))))).)).)))(((((..(((....((...(--(((((((((....)))))))).))...)).)))..)))))-------------------------- ( -35.30) >DroSec_CAF1 11997 92 - 1 AAUUUUGUUGGCCCAUAAAGGGCCAUCGUAAUGGGAAAAGUUGGCGCCACAU--CGGGGGCACAGGUGUGUCCCAAGGCAGGGAAAUAGUUCCC-------------------------- ......(.((((((.....)))))).)((..(((((..(.(((((.((....--..)).)).))).)...)))))..)).(((((....)))))-------------------------- ( -36.20) >DroEre_CAF1 9517 92 - 1 AAUUUUGUUGGCCCAUA-AGGGCCAUCGUUAUGCGAAAAGUUGGCGCCACAUGCCGGGGGCACAGGUGUGUC-CCAGGCAGGGAAAUAGUUCCC-------------------------- ((((((..((((((...-.))))))(((.....))))))))).........((((.(((((((....)))))-)).))))(((((....)))))-------------------------- ( -39.30) >DroWil_CAF1 12405 116 - 1 AAUUUUGUUGGCCCAUUAAAGGCCAUAAUAAUGGGAAAAGUUAGAGUUCCAG--A-AGUUCGCAGGUGUGUCCUUAUGCAU-GAAAUAGUUUUCUUUUUCUUUUCUUGCCCUCCCUCGAC ........(((((.......))))).......((((...((.((((...((.--(-((..(((....)))..))).))...-((((.((....)).))))..)))).))..))))..... ( -23.10) >DroYak_CAF1 9330 92 - 1 AAUUUUGUUGGCCCAUAAAGGGCCAUCGUAAUGGGAAAAGUUGGCGCCACAU--UGGGGGCACAGGUGUGUCCCCAGGCAGGGAAAUAGUUUCC-------------------------- .(((.((.((((((.....)))))).)).)))(((((..(((....((...(--(((((((((....))))))))))....)).)))..)))))-------------------------- ( -37.70) >consensus AAUUUUGUUGGCCCAUAAAGGGCCAUCGUAAUGGGAAAAGUUGGCGCCACAU__CGGGGGCACAGGUGUGUCCCCAGGCAGGGAAAUAGUUCCC__________________________ .(((.((.((((((.....)))))).)).)))(((((..(((....((.......((((((((....))))))))......)).)))..))))).......................... (-25.26 = -25.94 + 0.68)
Location | 2,697,165 – 2,697,280 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 69.89 |
Mean single sequence MFE | -37.80 |
Consensus MFE | -17.61 |
Energy contribution | -20.95 |
Covariance contribution | 3.34 |
Combinations/Pair | 1.12 |
Mean z-score | -2.81 |
Structure conservation index | 0.47 |
SVM decision value | 2.94 |
SVM RNA-class probability | 0.997828 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2697165 115 + 20766785 UGCCUGGGGACACACCUGUGCCCCCG--AUGUGGCGCCAACUUUUCCCAUUACGAUAGCCCUUUAUGGGCCAACAAAAUUGCCCAUUUCACGAGAGGAAUGCG-GGCCCACACCC--CGC ....(((((.(((....))).)))))--.(((((.(((...................((((.....))))............(((((((......)))))).)-))))))))...--... ( -36.60) >DroSec_CAF1 12011 115 + 1 UGCCUUGGGACACACCUGUGCCCCCG--AUGUGGCGCCAACUUUUCCCAUUACGAUGGCCCUUUAUGGGCCAACAAAAUUGCCCAUUUCACGGGAGGAAUGUG-GGCCCACAUCC--CGC ......(((.(((....))))))..(--((((((.(((.((..((((......(.((((((.....)))))).).......(((.......))).)))).)).-)))))))))).--... ( -46.30) >DroSim_CAF1 9469 115 + 1 NNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNGAUGGCCCUUUAUGGGCCAACAAAAUUGCCCAUUUCACGGGAGGAAUGUG-GGCCCACACCC--CGC ..........................--...........................((((((.....))))))........(((((((((.(....)))).)))-)))........--... ( -24.40) >DroEre_CAF1 9531 115 + 1 UGCCUGG-GACACACCUGUGCCCCCGGCAUGUGGCGCCAACUUUUCGCAUAACGAUGGCCCU-UAUGGGCCAACAAAAUUGCCCAUUUCAUGGCAGGAAUGUG-GGCCCACACCC--CGC ((((.((-(.(((....))).))).))))(((((.(((.((.((((.......(.((((((.-...)))))).).....((((........)))))))).)).-))))))))...--... ( -49.60) >DroWil_CAF1 12444 102 + 1 UGCAUAAGGACACACCUGCGAACU-U--CUGGAACUCUAACUUUUCCCAUUAUUAUGGCCUUUAAUGGGCCAACAAAAUUGCCCAUUCCUGGC-------------CCUACCCUU--GGG .(((...((.....))))).....-.--.................((((....((.((((...(((((((..........)))))))...)))-------------).))....)--))) ( -24.70) >DroYak_CAF1 9344 118 + 1 UGCCUGGGGACACACCUGUGCCCCCA--AUGUGGCGCCAACUUUUCCCAUUACGAUGGCCCUUUAUGGGCCAACAAAAUUGUCCAUUUCAGGCGAGGAAUGUGAGGCCCACACCCAACGC ....(((((.(((....))).)))))--.(((((.(((.((..((((......(.((((((.....)))))).)....(((((.......))))))))).))..))))))))........ ( -45.20) >consensus UGCCUGGGGACACACCUGUGCCCCCG__AUGUGGCGCCAACUUUUCCCAUUACGAUGGCCCUUUAUGGGCCAACAAAAUUGCCCAUUUCACGGGAGGAAUGUG_GGCCCACACCC__CGC ......(((.(((....))).)))......((((.(((.................((((((.....))))))...........((((((......))))))...)))))))......... (-17.61 = -20.95 + 3.34)
Location | 2,697,165 – 2,697,280 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 69.89 |
Mean single sequence MFE | -45.23 |
Consensus MFE | -20.23 |
Energy contribution | -22.67 |
Covariance contribution | 2.44 |
Combinations/Pair | 1.26 |
Mean z-score | -2.99 |
Structure conservation index | 0.45 |
SVM decision value | 3.14 |
SVM RNA-class probability | 0.998569 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2697165 115 - 20766785 GCG--GGGUGUGGGCC-CGCAUUCCUCUCGUGAAAUGGGCAAUUUUGUUGGCCCAUAAAGGGCUAUCGUAAUGGGAAAAGUUGGCGCCACAU--CGGGGGCACAGGUGUGUCCCCAGGCA ((.--.((((((((((-.((.(((((.(..(((....((((....))))(((((.....))))).)))..).)))))..)).))).))))))--)((((((((....))))))))..)). ( -53.00) >DroSec_CAF1 12011 115 - 1 GCG--GGAUGUGGGCC-CACAUUCCUCCCGUGAAAUGGGCAAUUUUGUUGGCCCAUAAAGGGCCAUCGUAAUGGGAAAAGUUGGCGCCACAU--CGGGGGCACAGGUGUGUCCCAAGGCA ((.--.((((((((((-.((.((((((((((...)))))..(((.((.((((((.....)))))).)).))))))))..)).))).))))))--).(((((((....)))))))...)). ( -54.10) >DroSim_CAF1 9469 115 - 1 GCG--GGGUGUGGGCC-CACAUUCCUCCCGUGAAAUGGGCAAUUUUGUUGGCCCAUAAAGGGCCAUCNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNN ..(--(((((((....-)))))))).(((((...))))).........((((((.....))))))...........................--.......................... ( -27.20) >DroEre_CAF1 9531 115 - 1 GCG--GGGUGUGGGCC-CACAUUCCUGCCAUGAAAUGGGCAAUUUUGUUGGCCCAUA-AGGGCCAUCGUUAUGCGAAAAGUUGGCGCCACAUGCCGGGGGCACAGGUGUGUC-CCAGGCA (((--(.(((((((((-.((.....((((........)))).((((((((((((...-.)))))).......)))))).)).))).)))))).)).(((((((....)))))-))..)). ( -55.31) >DroWil_CAF1 12444 102 - 1 CCC--AAGGGUAGG-------------GCCAGGAAUGGGCAAUUUUGUUGGCCCAUUAAAGGCCAUAAUAAUGGGAAAAGUUAGAGUUCCAG--A-AGUUCGCAGGUGUGUCCUUAUGCA (((--(....((.(-------------(((...(((((((..........)))))))...)))).))....))))..............((.--(-((..(((....)))..))).)).. ( -29.70) >DroYak_CAF1 9344 118 - 1 GCGUUGGGUGUGGGCCUCACAUUCCUCGCCUGAAAUGGACAAUUUUGUUGGCCCAUAAAGGGCCAUCGUAAUGGGAAAAGUUGGCGCCACAU--UGGGGGCACAGGUGUGUCCCCAGGCA ((....((((((((((.....(((((.(((......)).).(((.((.((((((.....)))))).)).)))))))).....))).))))))--)((((((((....))))))))..)). ( -52.10) >consensus GCG__GGGUGUGGGCC_CACAUUCCUCCCGUGAAAUGGGCAAUUUUGUUGGCCCAUAAAGGGCCAUCGUAAUGGGAAAAGUUGGCGCCACAU__CGGGGGCACAGGUGUGUCCCCAGGCA .......(((((((((...............(((((.....)))))..((((((.....)))))).................))).))))))....(((((((....)))))))...... (-20.23 = -22.67 + 2.44)
Location | 2,697,203 – 2,697,317 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.84 |
Mean single sequence MFE | -33.62 |
Consensus MFE | -16.80 |
Energy contribution | -18.61 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.14 |
Mean z-score | -2.32 |
Structure conservation index | 0.50 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.926942 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2697203 114 + 20766785 CUUUUCCCAUUACGAUAGCCCUUUAUGGGCCAACAAAAUUGCCCAUUUCACGAGAGGAAUGCG-GGCCCACACCC--CGCA---ACCCCCAUAAUGCUUAAUGGCGCGCAAAUGUGGGCC .................((((.....))))..........((((((....((.(.((..((((-((.......))--))))---..)).).....(((....))).)).....)))))). ( -32.70) >DroSec_CAF1 12049 114 + 1 CUUUUCCCAUUACGAUGGCCCUUUAUGGGCCAACAAAAUUGCCCAUUUCACGGGAGGAAUGUG-GGCCCACAUCC--CGCA---ACCCUCAUAAUGCUUAAUGGCGCGCAAAUGUUGGCC ......((((....)))).........((((((((....((((((((...((.((((..((((-((.......))--))))---..))))....))...))))).)))....)))))))) ( -38.20) >DroSim_CAF1 9507 114 + 1 NNNNNNNNNNNNNGAUGGCCCUUUAUGGGCCAACAAAAUUGCCCAUUUCACGGGAGGAAUGUG-GGCCCACACCC--CGCA---ACCCCCAUAAUGCUUAAUGGCGCGCAAAUGCUGGCC ...............((((((.....))))))........(((((((((.((((.((..((((-((.......))--))))---.))))).....(((....)))).).)))))..))). ( -36.50) >DroEre_CAF1 9570 113 + 1 CUUUUCGCAUAACGAUGGCCCU-UAUGGGCCAACAAAAUUGCCCAUUUCAUGGCAGGAAUGUG-GGCCCACACCC--CGCA---ACCCCCAUAAUGCUUAAUGGCGCGCAAAUGUUGGUC ......((.....(.((((((.-...)))))).)......(((((((....((((((..((((-((.......))--))))---..))......)))).))))).))))........... ( -35.80) >DroWil_CAF1 12481 95 + 1 CUUUUCCCAUUAUUAUGGCCUUUAAUGGGCCAACAAAAUUGCCCAUUCCUGGC-------------CCUACCCUU--GGGGAGGACAUCU-AAAUGUU---------CCAAAUGUUGCUU ...((((((....((.((((...(((((((..........)))))))...)))-------------).))....)--)))))((((((..-..)))))---------)............ ( -29.40) >DroYak_CAF1 9382 117 + 1 CUUUUCCCAUUACGAUGGCCCUUUAUGGGCCAACAAAAUUGUCCAUUUCAGGCGAGGAAUGUGAGGCCCACACCCAACGCA---ACUUCUAUAAUGUUUAAUGGCGCGCAAAUGUUGGCC ...((((......(.((((((.....)))))).)....(((((.......))))))))).....((((.(((.....(((.---....((((........)))).)))....))).)))) ( -29.10) >consensus CUUUUCCCAUUACGAUGGCCCUUUAUGGGCCAACAAAAUUGCCCAUUUCACGGGAGGAAUGUG_GGCCCACACCC__CGCA___ACCCCCAUAAUGCUUAAUGGCGCGCAAAUGUUGGCC ...............((((((.....))))))...........((((((......))))))...((((.(((.....(((.........................)))....))).)))) (-16.80 = -18.61 + 1.81)
Location | 2,697,203 – 2,697,317 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.84 |
Mean single sequence MFE | -39.18 |
Consensus MFE | -19.08 |
Energy contribution | -19.97 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.30 |
Mean z-score | -2.18 |
Structure conservation index | 0.49 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.856683 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2697203 114 - 20766785 GGCCCACAUUUGCGCGCCAUUAAGCAUUAUGGGGGU---UGCG--GGGUGUGGGCC-CGCAUUCCUCUCGUGAAAUGGGCAAUUUUGUUGGCCCAUAAAGGGCUAUCGUAAUGGGAAAAG ..((((...((((((.(((((...(((...((((..---((((--((.......))-))))..))))..))).)))))))......(.((((((.....)))))).)))))))))..... ( -45.30) >DroSec_CAF1 12049 114 - 1 GGCCAACAUUUGCGCGCCAUUAAGCAUUAUGAGGGU---UGCG--GGAUGUGGGCC-CACAUUCCUCCCGUGAAAUGGGCAAUUUUGUUGGCCCAUAAAGGGCCAUCGUAAUGGGAAAAG ((((.........).)))......((((((((((((---((((--(((((((....-))))))))..((((...)))))))))))...((((((.....))))))))))))))....... ( -42.40) >DroSim_CAF1 9507 114 - 1 GGCCAGCAUUUGCGCGCCAUUAAGCAUUAUGGGGGU---UGCG--GGGUGUGGGCC-CACAUUCCUCCCGUGAAAUGGGCAAUUUUGUUGGCCCAUAAAGGGCCAUCNNNNNNNNNNNNN .(((..(((((.(((.((((........))))(((.---...(--(((((((....-)))))))).))))))))))))))........((((((.....))))))............... ( -41.40) >DroEre_CAF1 9570 113 - 1 GACCAACAUUUGCGCGCCAUUAAGCAUUAUGGGGGU---UGCG--GGGUGUGGGCC-CACAUUCCUGCCAUGAAAUGGGCAAUUUUGUUGGCCCAUA-AGGGCCAUCGUUAUGCGAAAAG ((((..(((.(((..........)))..)))..)))---)(((--(((((((....-))))))))((((........))))((..((.((((((...-.)))))).))..))))...... ( -41.50) >DroWil_CAF1 12481 95 - 1 AAGCAACAUUUGG---------AACAUUU-AGAUGUCCUCCCC--AAGGGUAGG-------------GCCAGGAAUGGGCAAUUUUGUUGGCCCAUUAAAGGCCAUAAUAAUGGGAAAAG .....((((((((---------(...)))-))))))....(((--(....((.(-------------(((...(((((((..........)))))))...)))).))....))))..... ( -28.90) >DroYak_CAF1 9382 117 - 1 GGCCAACAUUUGCGCGCCAUUAAACAUUAUAGAAGU---UGCGUUGGGUGUGGGCCUCACAUUCCUCGCCUGAAAUGGACAAUUUUGUUGGCCCAUAAAGGGCCAUCGUAAUGGGAAAAG ((((.((((..(.((((.(((............)))---.)))))..)))).)))).....(((((.(((......)).).(((.((.((((((.....)))))).)).))))))))... ( -35.60) >consensus GGCCAACAUUUGCGCGCCAUUAAGCAUUAUGGGGGU___UGCG__GGGUGUGGGCC_CACAUUCCUCCCGUGAAAUGGGCAAUUUUGUUGGCCCAUAAAGGGCCAUCGUAAUGGGAAAAG ((((.(((((((((.(((.(((.......))).)))...)))...)))))).))))...............(((((.....)))))..((((((.....))))))............... (-19.08 = -19.97 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:48 2006