Locus 4836

Sequence ID 2R_DroMel_CAF1
Location 15,879,137 – 15,879,246
Length 109
Max. P 0.939155
window7770

overview

Window 0

Location 15,879,137 – 15,879,246
Length 109
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 77.15
Mean single sequence MFE -29.70
Consensus MFE -21.28
Energy contribution -22.40
Covariance contribution 1.12
Combinations/Pair 1.18
Mean z-score -1.87
Structure conservation index 0.72
SVM decision value 1.28
SVM RNA-class probability 0.939155
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15879137 109 - 20766785
--CUUAAGCAAUUAUCCAGAAAGUAUCGAU-----AAAUUUGUUCACAGUUUUCGUAUGCAUCGGAACCACUGUGCGCGGUGGCAGCUGCCUCAGCUGACUACACUAUGCUGCACA
--....((((.(((((...........)))-----))...(((.(((((((((((.......)))))..)))))).)))((((((((((...)))))).))))....))))..... ( -28.90)
>DroSec_CAF1 16316 93 - 1
-----------------------UAUUUUAUCGCCCUUUCUUGUCCCAGUUUUCGUAUAUAUUGGAACCACUGUGCCCGGUGGCAGCUGCCUCAGCUGACUACACUAUGCUGCACA
-----------------------...................((.(((((..........))))).))....((((..((((.((((((...))))))....)))).....)))). ( -20.00)
>DroSim_CAF1 13732 107 - 1
--AUUAAGCAAU--UCCAGAAAGUAUUGAA-----AAAUUUGUUCACAGUUUUCAUAUGCAUUGGAACCACUGUGCCCGGUGGCAGCUGCCUCAGCUGACUACACUAUGCUGCACA
--....((((.(--(((((...((((((((-----((...((....)).)))))).)))).))))))((((((....))))))((((((...)))))).........))))..... ( -29.00)
>DroEre_CAF1 14028 111 - 1
UUUUAAAGCAAUUAUCCGGAAAUUGUAGAA-----GAGUUUGUUCACAGUUUUCGUAUGCAUCGGAACCACUGUGCGCGGUGGCAGCUGCCCCAGCUGACUACACUAUGCUGCACA
.......(((......((((((((((.(((-----.......)))))))))))))...((((.((..((((((....))))))((((((...))))))......)))))))))... ( -33.40)
>DroYak_CAF1 16586 109 - 1
--UUUAAGCAAUUAUCCCGAAAUUGUAAAC-----GAGUUCGUUUAAAGUUUUCGCAUGCACCGGCACCACUGUGCCCGGUGGCAGCUGCCCCAGCUGACUACACUAUGCUGCACA
--.....(((........((((...(((((-----(....))))))....))))((((((((((((((....))).)))))).((((((...)))))).......))))))))... ( -37.20)
>consensus
__UUUAAGCAAUUAUCCAGAAAGUAUAGAA_____AAAUUUGUUCACAGUUUUCGUAUGCAUCGGAACCACUGUGCCCGGUGGCAGCUGCCUCAGCUGACUACACUAUGCUGCACA
......((((..............................(((.(((((((((((.......)))))..)))))).)))((((((((((...)))))).))))....))))..... (-21.28 = -22.40 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:27 2006