Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,878,568 – 15,878,710 |
Length | 142 |
Max. P | 0.998511 |
Location | 15,878,568 – 15,878,676 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 94.38 |
Mean single sequence MFE | -26.68 |
Consensus MFE | -26.18 |
Energy contribution | -26.38 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.81 |
Structure conservation index | 0.98 |
SVM decision value | 3.13 |
SVM RNA-class probability | 0.998511 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15878568 108 + 20766785 UACA------CAUGCUCCUACGAACAUCCGACUGCCGUUUGUCGCUGCGUAUUGGUACGUGCCGAAUGGCAACUGGAAAACUUUUUUAAUUUAAAAAAAUUCUGUGUUCUUUCG ....------...........(((((((((..(((((((((..((.(((((....))))))))))))))))..))))....(((((((...)))))))......)))))..... ( -26.80) >DroSec_CAF1 15731 108 + 1 UACA------CAUACUCCUACGAACAUCCGACUGCCGUUUGUCGCUGCGUAUUGGUACGUGCCGAAUGGCAACUGGAAAACUUUUUUAAUUUAAAAAAAUUCUGUGUUCUUUCG ....------...........(((((((((..(((((((((..((.(((((....))))))))))))))))..))))....(((((((...)))))))......)))))..... ( -26.80) >DroSim_CAF1 13154 108 + 1 UACA------CAUACUCCUACGAACAUCCGACUGCCGUUUGUCGCUGCGUAUUGGUACGUGCCGAAUGGCAACUGGAAAACUUUUUUAAUUUAAAAAAAUUCUGUGUUCUUUCG ....------...........(((((((((..(((((((((..((.(((((....))))))))))))))))..))))....(((((((...)))))))......)))))..... ( -26.80) >DroEre_CAF1 13456 106 + 1 UACA------CAUGCCCCUACGAACAUCCGACUGCCGUUUGUCGCUGCGUAUUGGUACGUGCCGAAUGGCAACUGGAAAACUUUUUUAAUUUAAA-AAACUCUGUGUUCU-UCG ....------...........(((((((((..(((((((((..((.(((((....))))))))))))))))..))))....(((((((...))))-))).....))))).-... ( -26.50) >DroYak_CAF1 15985 113 + 1 UACACACACACAUACCCCUACGAACAUCCGAAUGCCGUUUGUCGCUGCGUAUUGCUACGUGCCGAAUGGCAACUGGAAAACUUUUUUAAUUUAAAAAAAUUCUAUGUUCU-UCG .....................(((((((((..(((((((((..((.(((((....))))))))))))))))..))))....(((((((...)))))))......))))).-... ( -26.50) >consensus UACA______CAUACUCCUACGAACAUCCGACUGCCGUUUGUCGCUGCGUAUUGGUACGUGCCGAAUGGCAACUGGAAAACUUUUUUAAUUUAAAAAAAUUCUGUGUUCUUUCG .....................(((((((((..(((((((((..((.(((((....))))))))))))))))..))))....(((((((...)))))))......)))))..... (-26.18 = -26.38 + 0.20)
Location | 15,878,602 – 15,878,710 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 94.66 |
Mean single sequence MFE | -29.66 |
Consensus MFE | -25.52 |
Energy contribution | -25.56 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.85 |
Structure conservation index | 0.86 |
SVM decision value | 1.71 |
SVM RNA-class probability | 0.973256 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15878602 108 - 20766785 UAGUGUCGUCCUUCGUCUUGGGU--UGGACUAGCUGCGAAAGAACACAGAAUUUUUUUAAAUUAAAAAAGUUUUCCAGUUGCCAUUCGGCACGUACCAAUACGCAGCGAC ....(((((((.((......)).--.))))..((((((....(((..((((((((((((...))))))))))))...)))(((....)))...........))))))))) ( -28.80) >DroSec_CAF1 15765 108 - 1 UAGUGCCGUCCUUCGUCUUGGUU--UGGACUAGCUGCGAAAGAACACAGAAUUUUUUUAAAUUAAAAAAGUUUUCCAGUUGCCAUUCGGCACGUACCAAUACGCAGCGAC ((((.(((.((........))..--)))))))((((((....(((..((((((((((((...))))))))))))...)))(((....)))...........))))))... ( -28.60) >DroSim_CAF1 13188 108 - 1 UAGUGCCGUCCUUCGUCUUGGUU--UGGACUAGCUGCGAAAGAACACAGAAUUUUUUUAAAUUAAAAAAGUUUUCCAGUUGCCAUUCGGCACGUACCAAUACGCAGCGAC ((((.(((.((........))..--)))))))((((((....(((..((((((((((((...))))))))))))...)))(((....)))...........))))))... ( -28.60) >DroEre_CAF1 13490 106 - 1 CAGUCCCGUCCUUCGUCUUGGGU--UGGACUAGCUGCGA-AGAACACAGAGUUU-UUUAAAUUAAAAAAGUUUUCCAGUUGCCAUUCGGCACGUACCAAUACGCAGCGAC .(((((..(((........))).--.))))).(((((((-(((((.....))))-))....................((.(((....))))).........))))))... ( -30.10) >DroYak_CAF1 16025 109 - 1 UUGUCCCGUCCUUCGUCUUGGGUUUUGGACUCGCUGCGA-AGAACAUAGAAUUUUUUUAAAUUAAAAAAGUUUUCCAGUUGCCAUUCGGCACGUAGCAAUACGCAGCGAC ..((((...(((.......)))....))))(((((((..-..(((..((((((((((((...))))))))))))...)))(((....)))..(((....)))))))))). ( -32.20) >consensus UAGUGCCGUCCUUCGUCUUGGGU__UGGACUAGCUGCGAAAGAACACAGAAUUUUUUUAAAUUAAAAAAGUUUUCCAGUUGCCAUUCGGCACGUACCAAUACGCAGCGAC .......(((....((((........))))..((((((....(((..((((((((((((...))))))))))))...)))(((....)))...........))))))))) (-25.52 = -25.56 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:24 2006