Locus 4833

Sequence ID 2R_DroMel_CAF1
Location 15,876,834 – 15,876,937
Length 103
Max. P 0.762859
window7765

overview

Window 5

Location 15,876,834 – 15,876,937
Length 103
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 79.28
Mean single sequence MFE -23.37
Consensus MFE -15.38
Energy contribution -17.06
Covariance contribution 1.68
Combinations/Pair 1.17
Mean z-score -1.79
Structure conservation index 0.66
SVM decision value 0.51
SVM RNA-class probability 0.762859
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15876834 103 - 20766785
GAGUGGGACGGAGUCUUAGUCUGAAGAGCAAAUGAAUAAAAAAGUACUUGCAGAUGCACUGGCUACAGUGAGGCAUUAAUAAGUAAGUUAGCUA----------AAAAAAGAA-------
((.((((((...)))))).)).....(((.(((...........((((((..(((((.((.((....)).)))))))..)))))).))).))).----------.........------- ( -22.40)
>DroSec_CAF1 14015 105 - 1
GAGUGGGACGGAGUCUUAGUCUGAAGAGCAAAUGAAUAAAAAAGUACUUGCAGAUGCACUGGCUACAGUGAGGCAUUAAUAAGUGCGUUAGCUAC--------UAAAAAAGGA-------
((.((((((...)))))).))...(((((.(((..........(((((((..(((((.((.((....)).)))))))..)))))))))).))).)--------).........------- ( -24.70)
>DroSim_CAF1 11427 105 - 1
GAGUGGGACGGAGUCUUAGUCUGAAGAGCAAAUGAAUAAAAAAGUACUCGCAGAUGCACUGGCUACAGUGAGGCAUUAAUAAGUGCGUUAGUUGC--------UAAAAAAAAA-------
((.((((((...)))))).)).....(((((.....(((....(((((....(((((.((.((....)).)))))))....))))).))).))))--------).........------- ( -25.40)
>DroEre_CAF1 11679 120 - 1
GAGUGGGACGGAGUCUUAGACUGCAGAGCAAAUGAAUAAAAAAGUACUUGCAGAUGCAGUGGCUACAGUGAAGCAUGAAUAGGUUCGUUUACAACGUAAAACCUAAAAAUGAACAGUGAA
.((((((((...)))))..((((((..((((................))))...)))))).))).((.((...(((...(((((((((.....)))...))))))...)))..)).)).. ( -24.89)
>DroYak_CAF1 14197 103 - 1
GAGUGAGACGGAGUCUUAGUCUGCAGAGCAAAUGAAUAAAAAAGUACUCGCAGAUGCAGUGGCUACAGUGAAGCAUCAAUAAGA----------------AUCAAGAAUUG-CAACUAAA
..(..(....((.(((((((((((.(((..................))))))))).((.((....)).)).........)))))----------------.)).....)..-)....... ( -19.47)
>consensus
GAGUGGGACGGAGUCUUAGUCUGAAGAGCAAAUGAAUAAAAAAGUACUUGCAGAUGCACUGGCUACAGUGAGGCAUUAAUAAGUGCGUUAGCUAC________UAAAAAAGAA_______
((.((((((...)))))).))......................(((((((..(((((.((.((....)).)))))))..))))))).................................. (-15.38 = -17.06 +   1.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:22 2006