Locus 4830

Sequence ID 2R_DroMel_CAF1
Location 15,871,591 – 15,871,688
Length 97
Max. P 0.824025
window7759

overview

Window 9

Location 15,871,591 – 15,871,688
Length 97
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 89.66
Mean single sequence MFE -15.26
Consensus MFE -13.54
Energy contribution -12.66
Covariance contribution -0.88
Combinations/Pair 1.21
Mean z-score -1.46
Structure conservation index 0.89
SVM decision value 0.69
SVM RNA-class probability 0.824025
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15871591 97 - 20766785
CUCUUUUUCUUGCCCCAAACCCGCAUCGCCCUUCGCGUUUUUUUGUGGGUAAUUGAUGUUCUUUACCCUGCAAUUAACCCCCACCUCAGUCAUCC--CU
.........((((..((((((((((.(((.....)))......)))))))..)))..((.....))...))))......................--.. ( -13.50)
>DroSec_CAF1 8881 98 - 1
CGUUUUUUCUUGCCCCAAGCCCGCAUCGCCUUUCGCGUUU-UUUGUGGGUAAUUGAUGUUCUUUACCCUGCAAUUAACCCCCACCUCAGCCAUCCCCCG
...........((.....(((((((.(((.....)))...-..)))))))(((((..((.....))....))))).............))......... ( -14.90)
>DroSim_CAF1 6320 97 - 1
CGUUUUUUCUUGCCCCAAACCCGCAUCGCCUUUCGCGUUU-UUUGUGGGUAAUUGAUGUUCUUUACCCUGCAAUUAACC-CCACCUCAGCCAUCCCCCU
......................((...((.....))(((.-.((((((((((..........)))))).))))..))).-........))......... ( -14.60)
>DroEre_CAF1 6776 95 - 1
CCUUUUUUCUUGCCCCC-GCCCGCAUUGCUUUUCGCGUUU-UUUGUGGGUAAUUGAUGUUCUUUACCCUGCAAUUAACCCCCACCUCAGCCAGCC--AC
.................-((..((...((.....))(((.-.((((((((((..........)))))).))))..)))..........))..)).--.. ( -16.80)
>DroYak_CAF1 9169 95 - 1
CUUUUUUUCUUACCCCU-GCCCGCAUUGCUUUUCGCGUUU-UUUGUGGGUAAUUGAUGUUCUUUACCCUGCAAUUAACCUCCACCUCAGUCAGCA--CU
................(-((..((...((.....))(((.-.((((((((((..........)))))).))))..)))..........))..)))--.. ( -16.50)
>consensus
CGUUUUUUCUUGCCCCAAGCCCGCAUCGCCUUUCGCGUUU_UUUGUGGGUAAUUGAUGUUCUUUACCCUGCAAUUAACCCCCACCUCAGCCAUCC__CU
...........((.....(((((((.(((.....)))......)))))))(((((..((.....))....))))).............))......... (-13.54 = -12.66 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:17 2006