Locus 483

Sequence ID 2R_DroMel_CAF1
Location 2,695,771 – 2,695,872
Length 101
Max. P 0.661689
window913

overview

Window 3

Location 2,695,771 – 2,695,872
Length 101
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 80.44
Mean single sequence MFE -34.60
Consensus MFE -24.28
Energy contribution -23.76
Covariance contribution -0.52
Combinations/Pair 1.20
Mean z-score -1.64
Structure conservation index 0.70
SVM decision value 0.27
SVM RNA-class probability 0.661689
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2695771 101 - 20766785
CUUUCCUGAGUUUACGAACAGCAUACCGUUAAUCUUAACGGCUGCACGGGAAACCACAGAUUCC---------GUUCCCUUUCCCUGGUCAGGUUCUGCCCUGGAAGGGC
...............((((.(((..((((((....)))))).)))..((....)).........---------))))(((((((..((.(((...))).)).))))))). ( -31.40)
>DroSec_CAF1 10610 98 - 1
CUUUCCUGAGUUGACGAACAGCAUACCGUUGAUCUUAACGGCUGCACGGGAAACCACAGCUUCA---------GUU---UUUCCCUGGUCAGGCUCUGCCCUGGAAGGGC
.....((((((((.......(((..((((((....)))))).)))..((....)).)))).)))---------)..---...((((..(((((......))))).)))). ( -33.30)
>DroSim_CAF1 8031 98 - 1
CUUUCCUGAGUUGACGAACAGCAUACCGUUGAUCUUAACGGCUGCACGGGAAACCGCAGCUCCA---------GUU---UUUCCCUGGUCAGGCUCUGCCCUGGAAGGGC
....((((((((((.((.((((.....)))).)))))))((((((..((....))))))))(((---------(..---.....)))))))))....((((.....)))) ( -36.60)
>DroEre_CAF1 8128 110 - 1
CUUUCCUGAGUUCACGAAGAGCAUGCCGUUGAUCCUAACGGCUGCACGGGAAACCACAGAUUCCACAGAUGCCGGUUCUAUUCCCUGGUCGGGAUCUGCCCUGCGAGGGC
.(((((((...((.....))(((.(((((((....)))))))))).)))))))....(((((((......(((((.........))))).)))))))((((.....)))) ( -37.50)
>DroYak_CAF1 7949 101 - 1
CUUUCCUGAGUUCAUAUAGAGCGUACCGUUGAUGAUAACGGCUGCACGGGAAACGACAGAUUCC---------UGAUUUUUUGCCGGGUCAGGAUCUGCCUUGUGGUGUU
..((((((.((((.....))))(((((((((....)))))).))).))))))(((((((((.((---------((((((......)))))))))))))..))))...... ( -34.20)
>consensus
CUUUCCUGAGUUCACGAACAGCAUACCGUUGAUCUUAACGGCUGCACGGGAAACCACAGAUUCC_________GUU___UUUCCCUGGUCAGGAUCUGCCCUGGAAGGGC
.(((((((.((((.....))))...((((((....)))))).....))))))).............................((((...((((......))))..)))). (-24.28 = -23.76 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:42 2006