Locus 4829

Sequence ID 2R_DroMel_CAF1
Location 15,863,917 – 15,864,007
Length 90
Max. P 0.621885
window7758

overview

Window 8

Location 15,863,917 – 15,864,007
Length 90
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 91.37
Mean single sequence MFE -26.66
Consensus MFE -22.79
Energy contribution -22.57
Covariance contribution -0.22
Combinations/Pair 1.06
Mean z-score -1.94
Structure conservation index 0.85
SVM decision value 0.18
SVM RNA-class probability 0.621885
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15863917 90 + 20766785
CGUCCCGCUC----UCUCACUCCACGUUGCUGUACCGUUCCCACUCGCUUGGUCGCUUCGUGGCAACAUGCUGACAUAUUGCGGGGCAUAAUUU
.(((((((..----..(((...((.(((((..(...((..(((......)))..))...)..))))).)).)))......)))))))....... ( -27.80)
>DroSim_CAF1 20464 90 + 1
CGUCCCGCUC----UCUCACUCCCCUUUGCUGUACCGUUCCCACUCGCUUGGUCGCUUCGUGGCAACAUGCUGACAUAUUGCGGGGCAUAAUUU
.(((((((..----............((((..(...((..(((......)))..))...)..))))..............)))))))....... ( -23.39)
>DroEre_CAF1 22694 94 + 1
CGUCCCGCUCCCACUCCCACUCCCCGUUGCUAUGCCGCUCGCACUCCCUUGGUCGCUUCGUGGCAACAUGCUGACAUAUUGCGGGGCAUAAUUU
.(((((((.................(((((((((..((..((.(......))).))..)))))))))(((....)))...)))))))....... ( -28.80)
>consensus
CGUCCCGCUC____UCUCACUCCCCGUUGCUGUACCGUUCCCACUCGCUUGGUCGCUUCGUGGCAACAUGCUGACAUAUUGCGGGGCAUAAUUU
.(((((((....................((......)).............((((...((((....)))).)))).....)))))))....... (-22.79 = -22.57 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:16 2006