Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,840,599 – 15,840,692 |
Length | 93 |
Max. P | 0.730405 |
Location | 15,840,599 – 15,840,692 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 87.21 |
Mean single sequence MFE | -31.52 |
Consensus MFE | -25.74 |
Energy contribution | -25.38 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.21 |
Mean z-score | -2.14 |
Structure conservation index | 0.82 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.730405 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15840599 93 - 20766785 CUCCGACUCAGACUUCUUAUGUUGCUGGCUGUGCGUGCUUCUCAUUGAUGAGAAUCUCGUGCAGCUUAAUAUCUUUCGGCGUGGAGGUGUCCA ....(((....((((((.((((((..(((((..((.(.((((((....)))))).).))..)))))..........))))))))))))))).. ( -30.50) >DroPse_CAF1 565 90 - 1 CUUCGAUUCAGAC---CUUCGGCUCUGGCUGCGCGUGCUUCUCGUUGAUGAGAAUCUCGUGCAGCUUUAUGUCCUGCGGCGUGGAGGUGUCGA ..(((((.((((.---(....).))))((((((((.(.((((((....)))))).).))))))))((((((((....))))))))...))))) ( -36.10) >DroEre_CAF1 563 93 - 1 CUCCGACUCAGACUUCCUUUGUUUCUGGCUGUGCGUGCUUCUCAUUGAUGAGAAUCUCGUGCAGCUUAAUAUCUUUCGGCGUGGAAGUAUCAA ...........((((((..((((...(((((..((.(.((((((....)))))).).))..)))))...........)))).))))))..... ( -28.14) >DroYak_CAF1 563 93 - 1 CUCCGACUCAGACUUCCUUUGUUUCUGGCUGUGCGUGCUUCUCGUUGAUGAGAAUCUCGUGCAGCUUAAUAUCUUUCGGCGUGGAGGUAUCCA (.((((..((((...........))))((((..((.(.((((((....)))))).).))..))))..........)))).)((((....)))) ( -28.10) >DroAna_CAF1 567 93 - 1 UUCCAAUUCAGACUUCCUUCGUUUCUGGCUGGGCGUGCUUCUCGUUUAUGAGAAUCUCGUGCAGCUUAAUAUCCUGCGGUGUGGAGGUGUCGA ..........(((..(((((......(((((.(((.(.((((((....)))))).).))).)))))..(((((....)))))))))).))).. ( -30.20) >DroPer_CAF1 565 90 - 1 CUUCGAUUCAGAC---CUUCGGCUCUGGCUGCGCGUGCUUCUCGUUGAUGAGAAUCUCGUGCAGCUUUAUGUCCUGCGGCGUGGAGGUGUCGA ..(((((.((((.---(....).))))((((((((.(.((((((....)))))).).))))))))((((((((....))))))))...))))) ( -36.10) >consensus CUCCGACUCAGACUUCCUUCGUUUCUGGCUGUGCGUGCUUCUCGUUGAUGAGAAUCUCGUGCAGCUUAAUAUCCUGCGGCGUGGAGGUGUCGA (((((...((((...........))))((((((((.(.((((((....)))))).).))))))))................)))))....... (-25.74 = -25.38 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:05 2006