Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 15,832,741 – 15,832,832 |
Length | 91 |
Max. P | 0.927146 |
Location | 15,832,741 – 15,832,832 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 78.39 |
Mean single sequence MFE | -33.65 |
Consensus MFE | -20.62 |
Energy contribution | -21.62 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.14 |
Mean z-score | -2.07 |
Structure conservation index | 0.61 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.871720 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15832741 91 + 20766785 GACCAGCAGCUGGAUGGAAAACCAGCUGUGGCAACAGCCAAUUUGCUGGCCAAGGUCAUUAGCUCCAAGGUCGAUCAGCCCAGGAAGUCUG ((((.((((((((.(....).))))))))(((..((((......)))))))..))))....(((((..(((......)))..)).)))... ( -35.60) >DroSec_CAF1 8286 91 + 1 AACCAGCAGCUGGAUGGAAAACCAGCUGUGGCAACAGCCAAUCUGCUGGCGAAGGUCAUUAGCUCCAAGGUCGAUCAGCCCAGGAAGUCUG .....((((((((.(....).))))))))(((....)))...(((.((((....)))).))).(((..(((......)))..)))...... ( -30.60) >DroSim_CAF1 8268 91 + 1 AACCAGCAGCUGGAGGGAAAACCAGCUGUGGCCACAGCCAAUCUGCUGGCGAAGGUCAUUAGCUCCAAGGUCGAUCAGCCCAGGAAGUCUG .....((((((((........))))))))((((...((((......))))...))))....(((((..(((......)))..)).)))... ( -31.40) >DroAna_CAF1 7917 88 + 1 GUC---AAUGUGGAGACCAAGCCCUCGAUGGCCAAGGCCAGUCUCCUGGCCAAGGUGGUCAGCAGCAAGGGUGACCAGCCCAUCAAGCGGC ...---..((.(....))).(((((.(((((....((((((....))))))..(.((((((.(......).)))))).)))))).)).))) ( -37.00) >consensus AACCAGCAGCUGGAGGGAAAACCAGCUGUGGCAACAGCCAAUCUGCUGGCCAAGGUCAUUAGCUCCAAGGUCGAUCAGCCCAGGAAGUCUG .....((((((((........))))))))(((....((((......))))...(((((((........))).)))).)))........... (-20.62 = -21.62 + 1.00)
Location | 15,832,741 – 15,832,832 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 78.39 |
Mean single sequence MFE | -35.00 |
Consensus MFE | -21.65 |
Energy contribution | -23.15 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.09 |
Mean z-score | -2.18 |
Structure conservation index | 0.62 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.927146 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15832741 91 - 20766785 CAGACUUCCUGGGCUGAUCGACCUUGGAGCUAAUGACCUUGGCCAGCAAAUUGGCUGUUGCCACAGCUGGUUUUCCAUCCAGCUGCUGGUC ((...((((.(((........))).))))....)).....(((((((....((((....)))).((((((........))))))))))))) ( -33.10) >DroSec_CAF1 8286 91 - 1 CAGACUUCCUGGGCUGAUCGACCUUGGAGCUAAUGACCUUCGCCAGCAGAUUGGCUGUUGCCACAGCUGGUUUUCCAUCCAGCUGCUGGUU ((...((((.(((........))).))))....))......((((((....((((....)))).((((((........)))))))))))). ( -31.50) >DroSim_CAF1 8268 91 - 1 CAGACUUCCUGGGCUGAUCGACCUUGGAGCUAAUGACCUUCGCCAGCAGAUUGGCUGUGGCCACAGCUGGUUUUCCCUCCAGCUGCUGGUU ((...((((.(((........))).))))....))......((((((....((((....)))).((((((........)))))))))))). ( -31.30) >DroAna_CAF1 7917 88 - 1 GCCGCUUGAUGGGCUGGUCACCCUUGCUGCUGACCACCUUGGCCAGGAGACUGGCCUUGGCCAUCGAGGGCUUGGUCUCCACAUU---GAC (((.((((((((..((((((.(......).))))))((..((((((....))))))..)))))))))))))...(((........---))) ( -44.10) >consensus CAGACUUCCUGGGCUGAUCGACCUUGGAGCUAAUGACCUUCGCCAGCAGAUUGGCUGUGGCCACAGCUGGUUUUCCAUCCAGCUGCUGGUC .....((((.(((........))).))))............(((((((...((((....))))..(((((........)))))))))))). (-21.65 = -23.15 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:04 2006