| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,826,291 – 15,826,394 |
| Length | 103 |
| Max. P | 0.965103 |
| Location | 15,826,291 – 15,826,394 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.31 |
| Mean single sequence MFE | -29.62 |
| Consensus MFE | -23.42 |
| Energy contribution | -23.45 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.965103 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15826291 103 - 20766785 UUCUU--------------CCACAAAUGAAAUACAGAUCAGUCUAAACCAACGACGAAAUUUGGAGACGAGCCGGACCUCCUGUUCAAGCGAGCGCAGGGCCGGAUUAGUCUGAUC---A .....--------------................((((((.((((.............((((....))))((((.(((..(((((....)))))..))))))).)))).))))))---. ( -32.50) >DroVir_CAF1 1893 99 - 1 UUCUC-----------------UUGC-AUGCAACAGAUCAGUCUAAACUAUCAACGAAAUUUGGAGACGAGCCGGACCUCCUGUUCAACCGAGCGCAGGGCCGGAAUAGUCUGCAG---A .(((.-----------------(((.-...))).)))......................((((.((((...((((.(((..(((((....)))))..)))))))....)))).)))---) ( -28.70) >DroGri_CAF1 1951 93 - 1 GUUUA-----------------U-------UAACAGAUCAGUCUAAACUAACGACGAAAUUUGGAGACGAGCCGGAUCUCGUGUUCAACGGAGCGCAGAGCCGGAAUAGUCUGCAG---A .....-----------------.-------..........(((.........)))....((((.((((...((((.(((.((((((....))))))))).))))....)))).)))---) ( -28.40) >DroWil_CAF1 8972 101 - 1 UACUC--------------CCAU--UGCUUUUACAGAUCAGUCUAAACCAACAACGAAAUUUGGAGACGAGCCGGACCUCCUGUUCAACCGAGCGCAGGGCCGGAUUAGUCUGUAU---A .....--------------....--......(((((((..((((...((((.........))))))))...((((.(((..(((((....)))))..)))))))....))))))).---. ( -28.20) >DroMoj_CAF1 1868 97 - 1 ----------------------UUCC-UUUCAACAGAUCAGUCUAAACUAACAACGAAAUUUGGAGACGAGCCGGACCUCCUGUUCAACCGAGCGCAGGGCCGGAAUAGUCUGCUGAAUA ----------------------....-.((((.(((((.....................((((....))))((((.(((..(((((....)))))..)))))))....))))).)))).. ( -27.40) >DroAna_CAF1 1814 116 - 1 AUUUCUCAACUAUUCCAUUUCCUAAC-CCACAACAGAUCAGUCUAAACAAACAACGAAAUUUGGAGACGAGCCGGACCUCCUGUUCAAGCGAGCGCAGGGCCGGAUUAGUCUGAUC---A ..........................-........((((((.((((.............((((....))))((((.(((..(((((....)))))..))))))).)))).))))))---. ( -32.50) >consensus UUCUC_________________U__C_CUACAACAGAUCAGUCUAAACUAACAACGAAAUUUGGAGACGAGCCGGACCUCCUGUUCAACCGAGCGCAGGGCCGGAAUAGUCUGCAG___A ......................................(((.(((..............((((....))))((((.(((..(((((....)))))..)))))))..))).)))....... (-23.42 = -23.45 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:00 2006