Locus 482

Sequence ID 2R_DroMel_CAF1
Location 2,693,203 – 2,693,323
Length 120
Max. P 0.772112
window912

overview

Window 2

Location 2,693,203 – 2,693,323
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.17
Mean single sequence MFE -35.09
Consensus MFE -23.62
Energy contribution -25.02
Covariance contribution 1.40
Combinations/Pair 1.23
Mean z-score -2.26
Structure conservation index 0.67
SVM decision value 0.53
SVM RNA-class probability 0.772112
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2693203 120 + 20766785
AGGAGGAUACAUCUGAGGGUAUAAUUAACCCAGAUGGCUUAGCCAAUGACCUUAUAAAGGGGAUUUUCAAAAAUUAUCCUGAACGAGGUCUCCACGAAGAGUCAUCCUUCAGUGUGUCUU
...((((((((.((((((((.......)))).((((((((..(....((((((....(((((((((....))))).))))....)))))).....)..))))))))..)))))))))))) ( -40.20)
>DroSec_CAF1 8049 120 + 1
AGGAGGAUACAUCCGAGGGUAUGAUUCACCCAGAUGGCUUAGCCAAUGACCUUAUAAAGGGAGUUUUCAAAAAUUAUCCUGAACGGGGUCUCCACGAAGAGUCAUCCUUCAGUGUGUCUU
...(((((((((..(((((.(((((((.......((((...))))..(((((..(..(((((((((....))))).))))..)..)))))........)))))))))))).))))))))) ( -41.30)
>DroSim_CAF1 5459 120 + 1
AGGAGGAUACAUCCGAGGGUAUGAUUCACCCAGAUGGCUUAGCCAAUGACCUUAUAAAAGGAGUUUUCAAAAAUUAUCCUGAACGGGGUCUCCACGAAGAGUCAUCCUUCAGUGUGUCUU
...(((((((((..(((((.(((((((.......((((...))))..(((((..(...((((..............))))..)..)))))........)))))))))))).))))))))) ( -39.54)
>DroEre_CAF1 5569 120 + 1
AGGCGGAUUCAUCAGAGGGUGCGAUUCAGCCAGACGACUUAGCCAAUGACCUCAUUAAAGGGAUUUUCAAAAAUUAUCCUGAGCGAGGCAUCCACGAUGAGCCAUCCUUCAGUGUGUCUG
...(((((.(((..(((((((.(.((((((...........))..(((.((((.((...(((((...........))))).)).)))))))......))))))))))))..))).))))) ( -29.00)
>DroYak_CAF1 5375 120 + 1
AGGAGGACACAUCCAACACAUCCAUUCACCCAGAUGGCUUAGCCAAUGACCUUAUAAAAGGCAUUUUCAACAAUUAUUCCGAACGAGGACUUCACCAUGAGUCAUCCUUCAGUGUAUCCU
(((((((....))).((((..(((((......)))))....(..((((.((((....))))))))..)............(((.((.(((((......))))).)).))).)))).)))) ( -25.40)
>consensus
AGGAGGAUACAUCCGAGGGUAUGAUUCACCCAGAUGGCUUAGCCAAUGACCUUAUAAAAGGAAUUUUCAAAAAUUAUCCUGAACGAGGUCUCCACGAAGAGUCAUCCUUCAGUGUGUCUU
...(((((((((....((((.......)))).((((((((.......((((((.....((((((((....))))..))))....))))))........)))))))).....))))))))) (-23.62 = -25.02 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:41 2006